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Table 2 Changes in early gene expression: gene regulation, signaling, cytoplasmic transport and metabolism

From: Differential effects of Th1, monocyte/macrophage and Th2 cytokine mixtures on early gene expression for molecules associated with metabolism, signaling and regulation in central nervous system mixed glial cell cultures

TRANSCRIPTION FACTORS

U04860

aryl hydrocarbon receptor

-2.48****

-2.66**

 

X14788

CREB

2.46*

 

2.02*

Hi1677

eIF5 (elongation initiation factor 5)

 

2.47**

 

Al03194

eIF5 (elongation initiation factor 5)

 

2,06***

 

Al638955

fox-1 homolog

4.83**

 

4.08****

L13261

hepatic nuclear factor 3 (forkhead homolog 1)

 

2.09***

 

L09647

hepatic nuclear factor 3 beta

-2.23**

-2.29*

-2.35**

AB01774

hepatic nuclear factor 3 gamma

  

-2.21*

X57133

hepatic nuclear factor 4 alpha

-2.61**

-4.80****

-3.46****

X57133

hepatic nuclear factor 4 alpha

-6.63***

-3.69***

-2.92**

D10554

hepatic nuclear factor 4 alpha

  

-2.38**

AA891041

junB

4.49***

 

2.48**

X54686

junB

2.29****

2.83****

2.14****

L26267

NFkappa B, p105 subunit

3.49**

3.97***

 

L23862

POU domain

 

-2.47**

 

NUCLEAR RECEPTORS

U40064

PPAR delta

2.31**

2.06**

 

AB011365

PPAR gamma

-5.41****

-4.52****

-2.09*

SIGNALING

L26986

adenylyl cyclase, type 8

 

-4.11*

 

U73503

calmodulin kinase II, gamma E

-2.26*

  

U09583

fyn-related kinase (src homology)

   

AB007688

homer

4.03*

4.03****

 

AA900503

jagged 1

2.15*

2.35*

 

L38483

jagged 1

 

2.38***

 

U13396

Janus kinase 2 (JAK 2)

5.20***

4.97***

 

U13396

Janus kinase 2 (JAK 2)

2.34***

  

AJ000557

Janus kinase 2 (JAK 2)

 

3.36***

 

L14951

lyn protein non-receptor kinase

2.45**

2.00*

 

L14782

lyn protein non-receptor kinase

2.17***

  

AA946094

lyn protein non-receptor kinase

2.14**

  

X96488

MAP kinase 12

-2.07*

  

M95437

phosphodiesterase 1B

 

-2.36**

 

AL235758

protein kinase A, 2, regulatory subunit

 

-2.15*

 

M18330

protein kinase C, delta

2.11**

  

U69109

protein tyrosine kinase 2B

4.59**

3.17**

 

AF063890

protein tyrosine kinase 2B

3.30***

  

Al113289

protein tyrosine phosphatase, non-receptor

2.31***

2.45***

 

AF05398

ras GTPase activating protein

-2.04**

  

U69702

receptor serine threonine kinase

-2.50*

-2.56*

 

U69702

receptor serine threonine kinase

 

-2.56*

 

AF097887

Rho family GTPase

 

-2.07***

 

AA892553

STAT 1

10.30***

  

X91810

STAT 3

2.49****

2.42****

 

U24175

STAT 5a

3.13***

4.41***

 

L27112

stress activated protein kinase alpha II

  

2.85***

CYTOPLASMIC TRANSPORT AND DEGRADATION OF PROTEINS

AF077354

heat shock 70 kDa protein 4

 

2.24**

 

AA799492

proteasome (prosome, macropain) alpha 6

9.69****

  

AA891383

proteasome (prosome, macropain) alpha 6

3.29***

  

D45249

proteasome activating subunit alpha

2.12***

  

D45250

proteasome activating subunit beta

3.68***

  

D21799

proteasome subunit RC7-1

2.12***

  

D10757

proteasome subunit R-RING

6.76****

  

D10757

proteasome subunit R-RING

6.45**

  

AJ224441

proteasome subunit R-RING

-3.62**

-3.78***

 

H31236

similar to ubiquitin-conjugating enzyme E2D 2

  

-2.50*

S73007

synuclein alpha (SYN 1)

2.87**

  

S73008

synuclein beta (SYN 2)

-3.82**

2.58**

 

AA874859

ubiquitin ligase (NEDD 4)

-2.25*

-3.19***

 

L38482

ubiquitin-conjugating enzyme

 

2.01**

 

U56407

ubiquitin-conjugating enzyme E2D 2

-4.18***

-6.38***

-4.76***

AA685152

ubiquitin-like protein (NEDD 6)

2.71***

2.90***

 

LIPID SYNTHESIS

S78687

3-OH-3-methylglutaryl CoA reductase

-2.34**

-2.34**

 

J02749

acetyl CoA acyl transferase

 

-2.34*

-2.29*

J03808

acetyl CoA carboxylase

-2.40*

  

AB010428

cytosolic acyl CoA thioesterase 1

3.91*

  

M95591

farnesyl phosphate farnesyl transferase

 

-2.11***

 

Al004900

fatty acid CoA ligase, long chain 2

2.47****

  

AA925424

fatty acid CoA ligase, long chain 4

-4.83***

-4.27****

 

M33648

mitochondrial 3-OH-3-methylglutaryl CoA synthase

  

-2.72**

Y09333

mitochondrial acyl CoA thioesterase

2.68**

  

D00512

mitochondrial fatty acid acetyl CoA thiolase

-2.39*

  

AA800303

phospholipid scramblase

3.16*

  

U07683

UDP-galactose ceramide galactosyl transferase

-3.14*

  

AF047707

UDP-glucose:ceramide glycosyltransferase

2.57***

2.61***

 

LIPID SIGNALING

AB00999

CDP-diacylglycerol synthase

9.91****

6.45****

 

AB00999

CDP-diacylglycerol synthase

2.52***

 

6.40****

AA818983

diacylglycerol kinase beta

-4.21**

  

U10303

EDG, endothelial sphingolipid GPCR

 

-6.17****

-2.65*

AA859981

myo-inositol monophosphatase

 

-2.01***

 

D88666

phosphatidyl serine specific phospholipase A

 

3.08**

 

D00036

phospholipase A2, group 1B

 

-4.15*

 

U03763

phospholipase A2, group 5

 

-4.17**

 

L14322

phospholipase C beta 1

-2.37**

  

STEROID AND VITAMIN D RELATED

U89280

17-beta hydroxy sterol reductase

-2.81**

 

-3.53****

X97754

17-beta hydroxy sterol reductase, type 1

-4.53***

  

L04619

25-OH vitamin D3 24-hydroxylase (Cyp24a1)

 

-5.20*

-4.42*

M95058

steroid 5-alpha reductase 2

-2.04**

  

M13646

testosterone 6-beta hydroxylase

 

-6.91***

-2.03*

Y07534

vitamin D3 25-hydroxylase (Cyp27a1)

2.49*

  

MISCELLANEOUS

X02361

alpha-fetoprotein

-2.50*

-2.56*

-2.49*

AA998229

alpha-fetoprotein

  

-2.22**

M90065

angiotensin receptor, type 1b

  

-5.02****

U01908

angiotensin receptor, type 2

-3.82**

  

J02720

arginase 1

  

4.82***

X03369

beta tubulin 2b

-4.09*

-4.90*

-11.96***

U60758

carbonic anhydrase II

2.46*

 

2.10*

Al043968

caveolin 3

 

-2.44*

 

AA817854

ceruloplasmin

 

2.56*

 

L33869

ceruloplasmin

 

2.04*

 

U49049

chapsyn-110

-4.05*

-4.77**

-29.4****

U09538

fyn-related kinase (src homology)

 

-2.49**

 

J03624

galanin

5.03**

3.22***

 

S57565

histamine H2 receptor

-2.62**

 

-2.17**

M11566

kallikrein S3

-2.34**

-2.48**

 

M27217

kallikrein-related (rGK-8)

 

-2.88**

 

AB005900

low density lipoprotein receptor 1

4.06**

2.18**

5.84**

AI07531

low density lipoprotein receptor 1

3.19****

 

5.40***

AI030685

nestin

-2.77*

  

U03699

nitric oxide synthase 2 (iNOS)

14.69***

14.61***

 

AA892953

similar to carbonic anhydrase

 

2.19*

 

U09361

VIP receptor 2

-3.14*

  
  1. Values represent averages of fold changes from three separate experiments for each cytokine mixture compared to control. The accession numbers are from Genbank.
  2. ****p < 0.01; ***p < 0.05; **p < 0.10; *p < 0.20.