| |
Fold Changes
|
---|
Genes
|
RefSeq
|
TBI/Sham
|
Sham+P/Sham
|
TBI+P/TBI
|
---|
Toll-like receptors
| | | | |
TLR1
|
NM_030682
|
2.99*
|
1.18
|
-1.33
|
TLR2
|
NM_011905
|
4.28*
|
2.82*
|
1.24
|
TLR3
|
NM_126166
|
1.20
|
1.82
|
1.20
|
TLR4
|
NM_021297
|
1.89*
|
1.54
|
1.05
|
TLR5
|
NM_016928
|
-1.28
|
1.49
|
1.47
|
TLR6
|
NM_011604
|
-1.12
|
1.88
|
1.70
|
TLR7
|
NM_133211
|
1.52
|
2.04
|
1.78
|
TLR8
|
NM_133212
|
1.79
|
3.44
|
1.55
|
TLR9
|
NM_031178
|
1.21
|
6.01*
|
3.31*
|
Muc13
|
NM_010739
|
1.15
|
-1.76
|
-1.39
|
Adaptors & interacting proteins
| | | | |
Btk
|
NM_013482
|
1.56
|
1.81
|
1.24
|
Cd14
|
NM_009841
|
7.51*
|
1.00
|
-1.84
|
Hmgb1
|
NM_010439
|
-1.07
|
1.19
|
1.12
|
Hras1
|
NM_008284
|
-1.78
|
1.88
|
2.74*
|
Hspa1a
|
NM_010479
|
1.97*
|
1.3
|
-1.37
|
Hspd1
|
NM_010477
|
1.05
|
-1.11
|
-1.21
|
MD-1
|
NM_010745
|
2.51*
|
1.06
|
1.02
|
Ly96
|
NM_016923
|
1.08
|
1.01
|
-1.07
|
Mapk8ip3
|
NM_013931
|
-1.09
|
-1.04
|
-1.06
|
MyD88
|
NM_010851
|
1.33
|
2.86*
|
2.65*
|
Peli1
|
NM_023324
|
-1.16
|
1.77
|
1.82
|
Pglyrp1
|
NM_009402
|
2.35*
|
1.64
|
1.34
|
Ripk2
|
NM_138952
|
1.10
|
1.18
|
1.04
|
Ticam1
|
NM_174989
|
-1.99
|
8.98*
|
16.18*
|
Ticam2
|
NM_173394
|
2.04*
|
4.87*
|
3.76*
|
Tirap
|
NM_054096
|
1.24
|
2.93
|
2.04*
|
Tollip
|
NM_023764
|
-1.09
|
1.12
|
1.11
|
Effectors
| | | | |
Casp8
|
NM_009812
|
-1.03
|
2.10*
|
2.04*
|
Fadd
|
NM_010175
|
1.34
|
6.02*
|
4.63*
|
Irak1
|
NM_008363
|
-1.09
|
2.11
|
1.82
|
Irak2
|
NM_172161
|
-1.16
|
2.05*
|
2.58*
|
Map3k7
|
NM_172688
|
-1.31
|
-1.01
|
1.08
|
Nr2c2
|
NM_011630
|
-1.34
|
1.88
|
2.03*
|
Ppara
|
NM_011144
|
-1.80
|
2.40*
|
2.72*
|
Eif2ak2
|
NM_011163
|
1.80
|
1.16
|
-1.37
|
Ube2n
|
NM_080560
|
-1.15
|
1.02
|
-1.01
|
Ube2v1
|
NM_023230
|
-1.11
|
1.44
|
1.45
|
Downstream and target genes
| | | | |
NFκB pathway
| | | | |
Ccl2
|
NM_011333
|
41.89*
|
1.15
|
-2.73*
|
Chuk
|
NM_007700
|
1.01
|
2.21
|
1.80
|
Csf2
|
NM_009969
|
1.50
|
1.67
|
-1.28
|
Csf3
|
NM_009971
|
3.07*
|
3.26*
|
2.32*
|
Hrb1 (agfg1)
|
NM_010472
|
-1.18
|
1.58
|
1.52
|
IKKb
|
NM_010546
|
-1.50
|
2.66*
|
3.10*
|
Il1a
|
NM_010554
|
2.03*
|
-1.23
|
-1.29
|
Il1b
|
NM_008361
|
8.69*
|
-1.17
|
-3.43*
|
Il1r1
|
NM_008362
|
2.16*
|
1.18
|
-1.28
|
Il2
|
NM_008366
|
-1.10
|
1.26
|
-1.45
|
Il6
|
NM_031168
|
5.17*
|
-2.17*
|
-2.33
|
Il10
|
NM_010548
|
2.06*
|
1.91
|
1.47
|
Il12a
|
NM_008351
|
1.20
|
1.64
|
1.44
|
Map3k1
|
NM_011945
|
-1.28
|
2.70
|
1.78
|
Nfkb1
|
NM_008689
|
1.03
|
1.26
|
1.09
|
Nfkb2
|
NM_019408
|
1.14
|
3.86*
|
3.69*
|
Nfkbia
|
NM_010907
|
1.22
|
1.29
|
1.35
|
Nfkbib
|
NM_010908
|
1.15
|
-1.22
|
-1.18
|
Nfkbil1
|
NM_010909
|
-1.22
|
5.17*
|
4.83*
|
Nfrkb
|
NM_172766
|
-1.20
|
1.65
|
1.47
|
Rel
|
NM_009044
|
1.11
|
1.12
|
1.03
|
Rela
|
NM_009045
|
-1.02
|
2.61*
|
2.6*
|
Tnf
|
NM_013693
|
19.31*
|
-1.05
|
-1.31
|
Tnfaip3
|
NM_009397
|
1.04
|
2.07*
|
2.38*
|
Tnfrsf1a
|
NM_011609
|
2.91*
|
5.1*
|
3.31*
|
Tradd
|
NM_001033161
|
1.09
|
-1.02
|
-1.14
|
JNK/p38 pathway
| | | | |
Elk1
|
NM_007922
|
-1.25
|
2.43*
|
2.13*
|
Fos
|
NM_010234
|
1.67
|
1.99
|
1.34
|
Jun
|
NM_010591
|
1.9*
|
1.56
|
1.1
|
Map2k3
|
NM_008928
|
1.40
|
1.28
|
-1.07
|
Map2k4
|
NM_009157
|
-1.26
|
-1.37
|
-1.34
|
Map3k1
|
NM_011945
|
-1.28
|
2.74
|
1.78
|
Mapk8
|
NM_016700
|
-1.45
|
1.73
|
1.94
|
Mapk9
|
NM_016961
|
-1.31
|
1.15
|
1.28
|
NF/IL6 pathway
| | | | |
Cebpb
|
NM_009883
|
2.06*
|
-1.19
|
-1.69
|
Clec4e
|
NM_019948
|
6.72*
|
-1.35
|
-1.43
|
Il6ra
|
NM_010559
|
1.13
|
1.38
|
1.14
|
Ptgs2
|
NM_011198
|
2.33*
|
1.99*
|
1.5
|
IRF pathway
| | | | |
Cxcl10
|
NM_021274
|
22.99*
|
-1.03
|
-4.46*
|
Ifnb1
|
NM_010510
|
1.03
|
-1.86
|
-1.66
|
Ifng
|
NM_008337
|
1.30
|
1.01
|
1.19
|
Irf1
|
NM_008390
|
1.62
|
1.80
|
1.18
|
Irf3
|
NM_016849
|
0.99
|
3.12
|
1.90
|
Tbk1
|
NM_019786
|
-1.17
|
1.28
|
1.31
|
Adaptive Immunity
| | | | |
CD80
|
NM_009855
|
1.26
|
1.15
|
1.27
|
CD86
|
NM_019388
|
1.20
|
-1.11
|
1.00
|
Traf6
|
NM_009424
|
1.24
|
4.57*
|
3.19*
|
- Note: Positive fold change indicates up-regulation. Negative fold change indicates down-regulation. *p < 0.05