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Table 2 Comparison of RNA-Seq and qRT-PCR data in 2 h JQ1 and LPS-treated BV-2 microglia cells

From: RNA sequencing reveals distinct mechanisms underlying BET inhibitor JQ1-mediated modulation of the LPS-induced activation of BV-2 microglial cells

RNA-Seq fold change

qRT-PCR fold change

Gene symbol

Gene accession ID

LPS_2 h

LPS + JQ1_2 h

LPS_2 h

LPS + JQ1_2 h

Ccl12

NM_011331

9.89

2.19

6.78

1.56

Il1a

NM_010554

57.04

34.96

67.98

36.02

Irf9

NM_001159418

3.23

0.59

3.45

0.59

Ptgs2

NM_011198

32.41

25.05

36.5

21.68

Irak3

NM_028679

3.44

2.11

5.47

1.75

Irf1

NM_001159393

14.31

3.46

16.79

7.15

Ccl2

NM_011333

24.67

10.23

26.44

10.16

Irg1

NM_008392

56.15

51.20

78.09

50.19

Ccl7

NM_013654

17.41

14.23

21.03

9.428