Gene | Locus | SNP | rs id | GMAF | Alleles | Genotyping method | Location | Predicted functional effect |
---|---|---|---|---|---|---|---|---|
IL1A | 2q13 | −889G>A | rs1800587 | 0.2786 | G/A | TaqMan AD (C_9546481_20)a | Promoter | TFBS, splicing (ESE or ESS) |
IL1B | 2q13 | +3954 C>T, Phe105Phe | rs1143634 | 0.1328 | C/T | PCR-RFLP | Exon 4 | sSNP, splicing (ESE or ESS) |
 |  | −31T>C | rs1143627 | 0.4724 | C/T | PCR-RFLP | Promoter | TFBS |
 |  | −511C>T | rs16944 | 0.4906 | T/C | PCR-RFLP | Promoter | TFBS |
IL1RN | 2q13 | (86)n VNTR | rs2234663 | Â | 1/2 | PCR FLP | Intron 2 | Regulatory protein-binding sites |
IL4 | 5q31.1 | −590C>T | rs2243250 | 0.4698 | C/T | PCR-RFLP | Promoter | TFBS |
 |  | −33C>T | rs2070874 | 0.4012 | C/T | TaqMan AD (C_16176215_10)a | Promoter | TFBS |
IL6 | 7p21 | −597G>A | rs1800797 | 0.1382 | G/A | PCR-RFLP | Promoter | TFBS |
 |  | −572G>C | rs1800796 | 0.3139 | G/C | PCR-RFLP | Promoter | TFBS |
 |  | −174G>C | rs1800795 | 0.1412 | G/C | PCR-RFLP | Promoter | TFBS |
IL10 | 1q31 | −592A>C | rs1800872 | 0.4349 | T/G | PCR-RFLP | Promoter | TFBS |
 |  | −819C>T | rs1800871 | 0.4347 | G/A | KASPar assay | Promoter | TFBS |
 |  | −1082G>A | rs1800896 | 0.2722 | T/C | KASPar assay | Promoter | TFBS |
IL3 | 5q31.1 | rs31400T>C | rs31400 | 0.4581 | T/C | TaqMan AD (C_3141153_10)a | Promoter | Promoter/regulatory region |
 |  | rs31480C>T | rs31480 | 0.2883 | C/T | TaqMan AD (C_2397270_10)a | Promoter | TFBS |
 |  | rs40401C>T, Ser27Pro | rs40401 | 0.4195 | C/T | TaqMan AD (C_2397269_30)a | Exon 1 | nsSNP, benign |
TNFA | 6p21.3 | −308G>A | rs1800629 | 0.0903 | G/A | KASPar assay | Promoter | TFBS |
 |  | −238G>A | rs361525 | 0.0609 | G/A | KASPar assay | Promoter | TFBS |
IFNG | 12q24.1 | +3232A>G | rs2069718 | 0.3832 | A/G | TaqMan AD (C_15799728_10)a | Intron 3 | – |
 |  | +874A>T | rs2430561 | 0.2802 | A/T | KASPar assay | Intron 1 | NFKB binding site |
TGFB1 | 19q13.2 | +915G>C, Arg25Pro | rs1800471 | 0.0483 | G/C | KASPar assay | Exon 1 | nsSNP, benign |
 |  | +869A>G, Leu10Pro | rs1800470 | 0.4547 | A/G | TaqMan AD (C_22272997_10)a | Exon 1 | nsSNP |
 |  | −509C>T | rs1800469 | 0.368 | C/T | KASPar assay | Promoter | TFBS |