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Table 3 Gene signature of MHC class II+ Minus versus Non-hematopoietic cells

From: MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis

Gene aymbol Gene name Log2FC (M/NH) FDR
Ly86 Lymphocyte antigen 86 8.243860053 5.61E-09
Ctss Cathepsin S 6.957996729 9.43E-09
Bin2 Bridging integrator 2 9.235207039 2.73E-08
Rac2 RAS-related C3 botulinum substrate 2 10.60734368 2.73E-08
Clec5a C-type lectin domain family 5, member a 15.17887896 2.73E-08
F4/80 Adhesion G protein-coupled receptor E1 9.972224185 3.90E-08
Fcgr3 Fc receptor, IgG, low affinity III 7.775892583 1.20E-07
Gatm Glycine amidinotransferase (L-arginine:glycine amidinotransferase) 8.65338182 2.18E-07
Anxa3 Annexin A3 8.397158434 2.55E-07
Ncr1 Natural cytotoxicity triggering receptor 1 14.1982847 3.02E-07
C1qc Complement component 1, q subcomponent, C chain 7.38704385 4.49E-07
Fli1 Friend leukemia integration 1 10.50996433 1.65E-06
Ccl12 Chemokine (C-C motif) ligand 12 15.2104167 2.66E-06
Hexb Hexosaminidase B 6.279744813 2.88E-06
Fyb FYN binding protein 6.513964387 3.63E-06
Cx3cr1 Chemokine (C-X3-C motif) receptor 1 6.581332934 3.77E-06
Ctla4 Cytotoxic T-lymphocyte-associated protein 4 14.1739945 4.06E-06
Cd53 CD53 antigen 6.217529713 5.05E-06
Fcgr1 Fc receptor, IgG, high affinity I 10.93059649 5.90E-06
IBA1 Allograft inflammatory factor 1 7.685685163 7.39E-06
Kctd12 Potassium channel tetramerisation domain containing 12 6.343559988 7.75E-06
Lmo2 LIM domain only 2 7.844870456 8.06E-06
Lilrb4 Leukocyte immunoglobulin-like receptor, subfamily B, member 4A 9.104873913 8.23E-06
Psd4 Pleckstrin and Sec7 domain containing 4 13.93584229 8.46E-06
Il18r1 Interleukin 18 receptor 1 11.54035827 8.91E-06
Mpeg1 Macrophage expressed gene 1 5.934098653 9.09E-06
Csf1r Colony stimulating factor 1 receptor 6.563851162 1.14E-05
Itgb2 Integrin beta 2 7.391669553 1.16E-05
Arhgdib Rho, GDP dissociation inhibitor (GDI) beta 6.250951528 1.23E-05
C1qb Complement component 1, q subcomponent, beta polypeptide 6.508090307 1.42E-05
  1. FDR false discovery rate