Bi-directional neuro-immune dysfunction after chronic experimental brain injury

Background It is well established that traumatic brain injury (TBI) causes acute and chronic alterations in systemic immune function and that systemic immune changes contribute to posttraumatic neuroinflammation and neurodegeneration. However, how TBI affects bone marrow (BM) hematopoietic stem/progenitor cells chronically and to what extent such changes may negatively impact innate immunity and neurological function has not been examined. Methods To further understand the role of BM cell derivatives on TBI outcome, we generated BM chimeric mice by transplanting BM from chronically injured or sham (i.e., 90 days post-surgery) congenic donor mice into otherwise healthy, age-matched, irradiated CD45.2 C57BL/6 (WT) hosts. Immune changes were evaluated by flow cytometry, multiplex ELISA, and NanoString technology. Moderate-to-severe TBI was induced by controlled cortical impact injury and neurological function was measured using a battery of behavioral tests. Results TBI induced chronic alterations in the transcriptome of BM lineage−c-Kit+Sca1+ (LSK+) cells in C57BL/6 mice, including modified epigenetic and senescence pathways. After 8 weeks of reconstitution, peripheral myeloid cells from TBI→WT mice showed significantly higher oxidative stress levels and reduced phagocytic activity. At eight months after reconstitution, TBI→WT chimeric mice were leukopenic, with continued alterations in phagocytosis and oxidative stress responses, as well as persistent neurological deficits. Gene expression analysis revealed BM-driven changes in neuroinflammation and neuropathology after 8 weeks and 8 months of reconstitution, respectively. Chimeric mice subjected to TBI at 8 weeks and 8 months post-reconstitution showed that longer reconstitution periods (i.e., time post-injury) were associated with increased microgliosis and leukocyte infiltration. Pre-treatment with a senolytic agent, ABT-263, significantly improved behavioral performance of aged C57BL/6 mice at baseline, although it did not attenuate neuroinflammation in the acutely injured brain. Conclusions TBI causes chronic activation and progressive dysfunction of the BM stem/progenitor cell pool, which drives long-term deficits in hematopoiesis, innate immunity, and neurological function, as well as altered sensitivity to subsequent brain injury. Supplementary Information The online version contains supplementary material available at 10.1186/s12974-024-03082-y.


Introduction
Traumatic brain injury (TBI) causes marked changes in both the systemic and central immune system.Neuroinflammation is a major contributor to secondary brain injury and contributes to disruption of the blood-brain barrier, neurodegeneration and neurological dysfunction [1][2][3].Importantly, TBI also triggers a systemic immune/inflammatory response.In patients with TBI, the numbers of circulating myeloid cells increase markedly during the first several days after hospitalization and correlate with poor outcomes [4,5].These myeloid cells are also recruited to the brain where they may contribute to worse outcome and/or neurological recovery [6][7][8][9], depending on underlying health conditions, temporal dynamics, and leukocyte composition.These increased levels of circulating immune cells may reflect activation of the hematopoietic system at its most upstream point.Hematopoietic stem/progenitor cells reside at the apex of the hematopoietic hierarchy, continuously giving rise to all cells of the blood and immune system.In response to sterile injury, the marrow rapidly adapts to produce specific cell types that are in high demand via a process known as stress-induced hematopoiesis.As the site of leukocyte production, bone marrow cells serve as critical regulators of neuroimmune interactions in health and disease [10].
In contrast to the acceleration of pro-inflammatory activity in the brain during the acute stages of posttraumatic injury, systemic immune function is broadly suppressed, resulting in an immunocompromised state that can lead to infection.Corroborating evidence indicates that TBI patients are at a substantially heightened risk of nosocomial infection during the first week of hospitalization [11][12][13][14].Secondary infection following acute TBI can worsen recovery, lengthen hospital stays, and increase mortality risk [15,16].The resolution of this early immune/inflammatory response facilitates the recovery phase, however, alterations in peripheral immune composition and function persist throughout the subacute and chronic phases [17][18][19], just as microglial activation may persist long after TBI [20].Indeed, our lab and others have experimentally shown that peripheral infections during acute and chronic stages of TBI are more severe compared to sham controls and often cause bidirectional damage [21][22][23][24][25][26].Although we have demonstrated that chronic microglial activation can aggravate post-traumatic neurodegeneration [27][28][29][30], the long-term consequences and progression of bone marrow dysfunction following brain injury remains largely undocumented.
We tested the hypothesis that moderate-to-severe TBI induces inherent changes to the bone marrow compartment that can, in turn, impact chronic immune dysfunction and worsen long-term neurological outcomes.To address this issue, we generated bone marrow chimeric mice using a novel transplantation strategy in which congenic sham and chronic TBI donors were used to reconstitute the immune system of otherwise healthy CD45.2C57BL/6 (WT) mice.This experimental approach allowed us to untangle the pathological effects of bone marrow cells from that imposed by the brain injury environment, to better understand the contribution of these cells on the development of long-term sequelae following TBI.

Animals and controlled cortical impact model of TBI
Adult male C57BL/6 mice (8-10 weeks, 20-25 g) and Pep Boy mice (B6.SJL-Ptprc a Pepc b /BoyJ, common name: B6 CD45.1, Strain#: 002014) were obtained from the Jackson Laboratory and housed in the UMB animal facility on a 12-hour light/dark cycle with food and water provided for them ad libitum.Controlled cortical impact (CCI) was performed with the TBI-0310 impactor (Precision Systems & Instrumentation, VA) as described in prior studies [27,31,32].Following induction of anesthetization with isoflurane, a 10-mm midline incision was made over the skull and a 4-mm craniotomy was made on the central aspect of the left parietal bone of mice under surgical anesthesia.A moderate-severe contusion injury was induced with a 3.5-mm diameter round tip at velocity of 4.0 m/s and tissue deformation depth of 1.2 mm.For sham surgery groups, mice were subjected to the same procedures, but didn't receive a contusion impact.All surgical procedures and animal experiments were performed according to ARRIVE guidelines (Animal Research: Reporting of In Vivo Experiments) used for animal studies approved by the University of Maryland School of Medicine Institutional Animal Care and Use Committee (IACUC).

Generation of bone marrow chimeras
5-15 min prior to irradiation, animals are anesthetized with Ketamine (80-150 mg/kg)/Xylazine (10-16 mg/kg) dissolved in saline.The anesthetic solution was administered intraperitoneally (0.1-0.5 ml) using a 1 ml syringe and 27-gauge needle.Total body irradiation was delivered using a fractionated two dose protocol of 550 rad three to four hours apart (1.22-1.28Gy/min) to deplete BM prior to transplant [33].Animals were exposed to radiation using a 320 kV orthovoltage machine (XRAD 320, Precision X-Ray).Radiation was delivered to the whole body without head shielding.Mice were given prophylactic antibiotics (0.01% Enrofloxacin (Baytril) in their drinking water beginning two days before BM transplantation for up to six weeks.Femur bone marrow cells were harvested from 90d TBI and sham congenic Pepboy (CD45.1)donor mice, and 100 µl of BM cells (1 × 10 6 cells/mouse) were intravenously injected by retroorbital injection in young adult male (8-10 weeks) recipient CD45.2 C57BL/6 mice (WT).Mice were allowed to reconstitute for 8 weeks and 8 months following transplantation.
Data were acquired on a BD LSRFortessa cytometer using FACSDiva 6.0 (BD Biosciences) and analyzed using FlowJo (Treestar Inc.).At least 5-10 million events were collected for each sample.CountBright Absolute Counting Beads (ThermoFisher, Cat# C36950) were used to estimate cell counts per the manufacturer's instructions.Data were expressed as counts/hemisphere.Leukocytes were first gated using a splenocyte reference (SSC-A vs. FSC-A).Singlets were gated (FSC-H vs. FSC-W), and live cells were gated based on Zombie Aqua exclusion (SSC-A vs. Zombie Aqua-Bv510).Bone marrow LSK + cells were identified as lineage − c-Kit + Sca1 + (Biolegend, Cat# 133,307, 405,226, 105,837, and 108,111).Blood and splenic neutrophils were identified as CD45 + CD11b + Ly6G + .Resident microglia were identified as the CD45 int CD11b + Ly6C − population, whereas peripheral leukocytes were identified as CD45 hi CD11b + myeloid cells or CD45 hi CD11b − lymphocytes.Cell typematched fluorescence minus one (FMO) controls were used to determine the positivity of each antibody.

Behavioral testing
Y-maze: To assess spatial working memory, Y-maze spontaneous alternation test was performed at indicated time with the same protocols described in prior publications [27,31].During the test, mice were randomly placed in one of three identical arms (A, B, C) that consisted of the Y-maze (Stoelting Co.) and allowed to freely move within the maze for 5 min.Arm entries were recorded and percentage of alternation was calculated with the following equation: total alterations x 100/(total arm entries -2).For indications of spatial working memory, the mouse must score significantly higher than 50%.
Spontaneous motor activity: Locomotor activity was measured with the open field (OF) test for spontaneous movement [27,34].At the start of the test, each mouse was individually placed in a corner of the open field arena (22.5 cm x 22.5 cm) facing towards the wall.The mouse was allowed to explore the chamber for 5 min and movement parameters were recorded with the Any-Maze software (Stoelting Co.).Total distance travelled, average speed, time mobile vs. immobile and rearing/elongation behavior were indicative of motor activity levels.
Tail-suspension test: For assessment of depressionlike behavior, tail-suspension test was performed [27,34,35].Based on the observation that mice would develop an immobile posture when placed in an inescapable hemodynamic stress of being hung by their tail, each mouse was suspended at a height of 28 cm using 3 M adhesive tape.The tail tip was prevented from wrapping around the rod while being suspended.During the 5-minute testing period, the total time of immobility was recorded, which is defined as passive hanging and complete motionlessness.Foam padding (3'' thick) was placed under the suspension beam to avoid harm in case of a fall during the experiment.
Grip strength: Grip strength was measured with a digital grip strength meter (Bioseb BP, In Vivo Research Instruments, France) as previously described [27,32].In brief, forelimb grip strength of both paws was measured together by placing the mouse on a mesh wire grid attached to the device's force transducer.Once a secure grip was confirmed, the mouse was then held by its tail and slowly pulled away from the bar.The maximal average force exerted on the mesh wire grid was recorded and an average number of 10 trials per day was obtained for each mouse.The final grip force was normalized by body weight before comparison between groups.
Rotarod: Locomotor function was assessed with rotarod as described in previous studies [27,32].Briefly, the mouse was placed on a rotarod device (IITC Life Science Inc.) with acceleration settings at 4 to 40 rpm over 90 s.The latency to fall was recorded, with a maximum trial time of 300s.Individual scores from three trials for each mouse were averaged to reflect their motor function.
Catwalk XT automated gait analysis: For assessment of motor coordination, the CatwalkXT system (Noldus, RRID: SCR_004074) was used for recording and analysis of gait [27,34].In a dark room, mice were placed on the glass walkway and allowed to traverse from one end to the other.Contact between the paws and glass surface results in illuminated footprints after light reflection.Footprint images were video recorded by a camera positioned under the walkway.Videos from each trial were analyzed with the CatWalk XT 9.1 software program at minimum threshold of 80 (a.u.ranging from 0 to 225).Following identification of footprint, data pertaining to static and dynamic gait parameters were generated for each run.The mean score from 3 consecutive runs (per animal/time points) are analyzed for statistical significance.Runs in which the mouse stopped midway or turned around during a run were excluded from analysis.

Multiplex enzyme-linked immunosorbent assay (ELISA)
Multiplex ELISA was performed on a Luminex FlexMAP 3D (Millipore Sigma) using a premixed 32-plex cytokine magnetic bead panel (MilliporeSigma, Cat# MCYT-MAG-70 K-PX32) following the kit protocol.Undiluted plasma (25 µl) was assayed in technical duplicates.Cytokine concentrations were determined by interpolation to known standard curves.Samples below the limit of detection were set to the lowest standard concentration.Analytes that were not within detectable limits or showed no change are not shown.

Magnetic isolation of immunolabeled cells
For magnetic isolation of blood neutrophils, red blood cells were lysed as above, and single cell suspensions were washed in selection media.Cells were then incubated with Fc block for 10 min on ice as noted above.Neutrophils were isolated using the MojoSort Mouse Ly6G Selection Kit (Biolegend, Cat# 480,058) according to manufacturer's instructions.For magnetic isolation of femur bone marrow LSK + cells, single cell suspensions were blocked and stained with biotinylated-lineage cocktail (Biolegend, Cat# 133,307) and stem/progenitor cells were negatively selected using streptavidin-conjugated nanobeads (Biolegend, Cat# 480,015).Lineage-negative cells were then stained with c-Kit-APC (Biolegend, Cat# 105,811) for positive selection with anti-APC-conjugated nanobeads (Biolegend, Cat# 480,071).Finally, Lin-cKit + bone marrow cells were stained with Sca1-APC (Biolegend, Cat# 108,111) for positive selection with anti-APC-conjugated nanobeads.The resulting neutrophil and LSK + cell populations were stored in Qiazol lysis reagent (Qiagen, Cat# 79,306) at -80 °C.

RNA isolation and NanoString assay
Total RNA was isolated from bone marrow and brain tissue samples with the RNeasy Mini Kit (Qiagen, Cat# 74,104) according to the manufacturer's instructions.Isolated RNA was eluted in 40 µl of RNase-free water and tested with an Agilent 2100 Bioanalyzer to ensure it met specifications for purity (RNA integrity number higher than 9).A portion of the total RNA sample (25 ng/µl) was loaded to the Nanostring nCounter platform (Nanostring Technologies, Seattle, WA) to measure transcript counts.The Stem Cell, Neuroinflammation, and Neuropathology panels were used for assessment of bone marrow and brain hemisphere tissue samples respectively.Gene transcript counts of each sample were normalized with NanoString nSolver 4.0 before further downstream analysis in RStudio Version 2022.12.0 + 353 with various bioinformatic packages.Partial least-squares discriminant analysis (PLSDA) was performed with the ropls package in R [36] and graphs were drawn with ggplot2.For heatmap illustrations, graphs were drawn with ComplexHeatmap [37].Pathway enrichment analysis was performed on the Enrichr website from Maayan lab [38,39].All pairwise comparisons of "A vs. B" should be interpreted as "A relative to B" in text and figures that pertains to fold-change.Volcano plots depicting the fold change and p-value of pairwise comparisons were drawn with the EnhancedVolcano package in R. Genes with a raw p-value of less than or equal to 0.05 were considered as differentially expressed genes (DEGs) and were further analyzed with pathway enrichment analysis.Percentage of genes modified by TBI injury were calculated as number of DEG versus total number of genes tested for that cellular function.

RNA sequencing of neutrophils
Isolated neutrophils were sent to Novogene (Sacramento, CA) for RNA extraction, mRNA library preparation (poly A enrichment) and sequencing on NovoSeq 6000 PE150 platform.Bioinformatic analyses were performed on High Performance Computing facility taki CPU cluster at University of Maryland Baltimore County.The quality of FastQ data were analyzed using FastQC v0.11.8 (Available at: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/).Transcript-level level abundance was quantified using Salmon V1.0.0 [40], mapping to GRCm38 (mm10) mouse reference genome, then converted to gene-level abundance using tximport.Differential expression analysis was performed using DESeq2 [41].Partial least squares-discriminant analysis (PLS-DA) was performed using mixOmics [42].Tximport, DESeq2, and mixOmics packages were run in R v4.1.2 in RStudio v1.2.Sample-level enrichment analysis (SLEA) were performed as described by Gundem et al. https:// genomemedicine.biomedcentral.com/articles/10.1186/gm327).Briefly, the null distribution of each sample was calculated as the mean expression of 10,000 sets of genes the same size as the scored gene sets.The mean expression of scored gene sets were calculated and z-scored based on the null distribution (SLEA score).Gene sets were downloaded from Gene Ontology Biological pathway database for Epigenetic regulation of gene expression (GO:0040029) and Chromatin remodeling (GO:0006338).

Statistical analysis
Data from individual experiments are presented as means ± SEM.Data were analyzed by Student's T-test or Mann-Whitney for two group comparisons, one-way analysis of variance (ANOVA) with Tukey or Bonferronni multiple comparisons test, and two-way ANOVA analysis with Tukey's post hoc correction for multiple comparisons.All behavioral and ex vivo studies were performed by an investigator blinded to condition, treatment, and surgical condition.Statistical analysis was performed using GraphPad Prism software v. 9.0 (GraphPad Software, Inc., La Jolla, CA).Outliers were determined using Grubb's test.P ≤ 0.05 was considered statistically significant.

TBI causes stress-induced myelopoiesis, chronic activation of bone marrow stem/progenitor cells, and long-term bone marrow failure
Recently we reported that moderate-to-severe TBI caused alterations in the bone marrow compartment that subsequently led to leukopenia and reduction in white blood cell production in the femur [28,44].To begin our next series of investigations into the brain-bone marrow axis, we examined the effect of TBI on stress-induced myelopoiesis.We found a significant increase in circulating myeloid cells and CD45 + leukocyte counts during the first week of injury (Fig. 1A and Supplemental Fig. 1, respectively), consistent with previous reports of acute neutrophilia [44,45].This coincided with a significant increase in myeloid cell production in femur bone marrow (Fig. 1B).Closer examination of the bone marrow stem cell compartment revealed a statistically insignificant trend toward higher percentages of LSK + stem/ progenitor cells at 72 h after TBI (Fig. 1C), implying hematopoietic activation at the highest level.Indeed, we found that the LSK + population exhibited increased protein expression of two markers of actively cycling and proliferating cells, Ki-67 and PCNA (Fig. 1D-E), consistent with the de novo production of myeloid cells following TBI.To assess the persistence of stem cell/progenitor activation after TBI, we evaluated the proliferative status of LSK + cells at 120 days post-injury (dpi).Although no changes in the frequency of LSK + cells were seen, TBI caused a continued elevation in Ki-67 and PCNA expression relative to sham controls (Fig. 1F-H).Total CD45 + leukocyte counts in the bone marrow were significantly lower after 120 days post-TBI compared to sham, yet no differences were seen between blood leukocyte counts at this time (Supplemental Fig. 1).As expected, we observed a significant reduction in both circulating and bone marrow-derived leukocytes by 365 dpi (Fig. 1I-J), consistent with replicative senescence.Taken together, our findings suggest that TBI induces chronic activation of the bone marrow compartment which eventually leads to decreased production and output of leukocytes that could significantly increase risk of infection.

TBI induces chronic transcriptomic alterations in bone marrow stem/progenitor cells and blood neutrophils
To confirm the chronic activation of the bone marrow compartment after TBI we evaluated the transcriptomic profile of femur LSK + cells at 90 dpi using the NanoString nCounter Stem Cell panel.PCA of all normalized gene counts revealed a distinct separation of sham and TBI samples on the first principal component accounting for 55.3% of total variance (Fig. 2A).Pathway enrichment analysis with the MSigDB Hallmark 2020 database revealed that several gene networks involved in hematopoietic stem cell proliferation and self-renewal (i.e., PI3K/AKT/mTOR signaling: Eif4e, Ptpn11, Cdkn1b, Ppp1ca), inflammatory activation (i.e., TGF-b: Tgfb1, Ifngr2, Ppp1ca, Ctnnb1 IL-6/JAK/STAT3: Tgfb1, Ifngr, Jun, Il6st, Cd44, Grb2 and TNF/NFkB signaling: Ifngr2, Id2, Gadd45a, Jun, Il6st, Cd44), and other biological processes (i.e., Myc targets VI, Oxidative Phosphorylation, and Apoptosis signaling) were enriched after chronic TBI (Fig. 2B).To further validate these findings, we performed an additional pathway analysis using gene annotations provided by NanoString for this panel.This analysis identified an increased percentage of genes modified in Apoptosis, Rho/ROCK signaling, Senescence & Quiescence, Hypoxia Response, and Cell Cycle pathways (Supplemental Fig. 2).A heatmap displaying the most differentially expressed genes in each group show TBI-mediated decreases in Junb and increases in Bub3, Hdac1, and Prdx3, for example (Fig. 2C).Volcano plot analyses for the Apoptosis (Fig. 2D), Senescence and Quiescence (Fig. 2E), Oxidative Stress Response (Fig. 2F), and Epigenetic Modification (Fig. 2G) pathways show the most differentially and significantly expressed genes within each network.Of note, genes encoding cell cycle progression (i.e., Ccnb2, CCna2, and Ccnb1) and DNA damage-responsive proteins such as p53 and Rad1 were significantly up-regulated at late timepoints following TBI.Taken together, moderate-to-severe TBI causes long-term alterations in distally located bone marrow stem/progenitor cells that affect transcriptional networks important for regulating apoptosis, cell cycle progression, inflammatory signaling, and senescence and quiescence.
Next, we examined blood neutrophil transcriptional profiles during the chronic stages of TBI (120 dpi) using bulk RNA-seq.PLSDA of all normalized gene counts revealed a clear separation of sham and TBI samples into individual groups across the first two principal components (Fig. 3A).We found that pathways involved in biosynthetic processes and translation were down-regulated after TBI, whereas those involved in stress and viral defense responses were up-regulated (Fig. 3B).Unsupervised clustering of the top 30 differentially expressed genes identified Parpbp, Krt10, Zfp973, Tmem88, and Trpm5 as being down-regulated following TBI (Fig. 3C).Given the relatively short life cycle of neutrophils we also wanted to determine whether TBI chronically altered genes involved in epigenetic modifications.To confirm this, we performed sample-level enrichment analysis (SLEA) for chromatin remodeling pathway and epigenetic regulation of gene expression (Fig. 3D-E).Epigenetic regulation of gene expression pathway was altered in neutrophils from the chronic TBI group.Additionally, 6 out of 268 genes from chromatin remodeling pathway were differentially expressed after TBI, including Smar-cad1, Tspyl4 and Hgfl3 up-regulated after TBI and Bcl7c, Chd3 and Wdhd1 down-regulated after TBI (Fig. 3F-G).Finally, to better understand the chronic effects of TBI on neutrophil function flow cytometry was applied.TBIinduced changes in spleen neutrophils were observed with regard to phagocytosis and oxidative stress levels, consistent with our previous work [44] (Fig. 3H-I).These findings suggest that chronic TBI promotes chromatin remodeling in circulating neutrophils which may have downstream effects on innate immunity during the chronic phase of TBI.

Immune systems derived from chronic TBI donor mice exhibit impaired innate immune function associated with neurological deficits
Our findings indicated that TBI causes persistent alterations in bone marrow cells.We postulated that the chronic effects of TBI on innate immunity, as described here and elsewhere [46], are cell-intrinsic and can be recapitulated in otherwise healthy mice using a novel bone marrow transplantation approach wherein sham and 90 dpi donor cells are transplanted into irradiated, congenic WT recipients (Fig. 4A).After 8 weeks of reconstitution, ∼99% of host cells were donor-derived and no differences in blood leukocyte counts were seen, compared to non-irradiated controls (Fig. 4B-D).Circulating and bone marrow-derived neutrophils from TBI→WT chimeric mice exhibited reductions in phagocytic activity (Fig. 4E-F) that coincided with increased oxidative stress levels (Fig. 4G), consistent with our earlier findings [44].Furthermore, significant reductions in TNF and IL1β production were also seen TBI→WT  4H-I).Together, these results indicate that TBI induces transcriptional alterations in bone marrow cells that subsequently and inherently reprogram innate immune function, even in the absence of the brain injury environment.
Thus far we have demonstrated that TBI can profoundly alter the hematopoietic compartment, however, its bidirectional impact on the brain warranted further attention.Employing the same chimera paradigm as before (Fig. 5A), we confirmed no differences in body weight between SH→WT and TBI→WT groups following irradiation (Fig. 5B).A battery of neurobehavioral tests was performed to assess motor, mood, and cognition.Interestingly, TBI→WT chimeric mice exhibited significantly poorer gait performance as evidenced by decreases in body speed, stride length, and swing speed (Fig. 5C-E).Consistent with the latter finding, swing durations were also increased in TBI→WT mice compared to non-irradiated controls (Fig. 5F).The latency to fall from an accelerating rotarod was significantly decreased in both chimeric groups (Fig. 5G), however, TBI→WT mice displayed significantly decreased forelimb grip strength (Fig. 5H).Whereas TBI→WT mice spent significantly more time in the center area of the open field chamber compared to SH→WT mice (Fig. 5I), no statistical differences were found for the tail suspension test (depressive-like behavior) (Fig. 5J).Nor were there differences in short-term spatial working memory, as reflected by the Y-maze test (Fig. 5K).Together, these results indicate that the chronic alterations observed in bone marrow cells following TBI can affect neurological function independent of the brain injury environment.
To further validate these findings, we next examined plasma cytokine levels and gene signatures of neuroinflammation in the chimeric mice.Increased plasma concentrations of senescence associated secretory phenotype (SASP)-related cytokines IP-10 [47,48], CCL11 [49], and KC [50,51] were more significantly altered in TBI→WT mice compared to controls (Fig. 5L-N).Surprisingly, despite reduced numbers of microglia in both irradiated groups (Fig. 5O-P), no differences in the number of peripherally-derivedCD45 hi leukocytes were detected in the brain by flow cytometry (Fig. 5Q).The NanoString nCounter Neuroinflammation gene panel revealed distinct separation of the non-irradiated WT group and two irradiated chimeric groups in the PLSDA plot, with loose clustering of SH→WT and TBI→WT groups (Fig. 5R).However, a deeper analysis revealed several genes associated with Microglial Function (Fig. 5S), Inflammatory Signaling (Fig. 5T), and the Innate Immune Response (Fig. 5U) were differentially expressed in TBI→WT compared SH→WT mice.Volcano plot analysis showed several genes that were significantly upregulated in the cortex of TBI→WT mice relative to SH→WT mice, including Cdkn1c (p57) and Cd74 (Fig. 5V).Collectively, these results suggest that inherent changes to the bone marrow compartment affect neurological function and are associated with systemic inflammatory mediators and imbalances in neuroinflammatory signaling.

Aging post-transplantation causes bone marrow failure and neurological dysfunction in mice reconstituted with chronic TBI bone marrow cells
Because TBI is a chronic neurodegenerative disease with gradually evolving and progressive pathology, we hypothesized that the effects of aging and time post-injury would further worsen the TBI-like phenotype recapitulated in the TBI→WT chimeric mice.To address this question, we allowed the irradiated hosts to reconstitute for 8 months after transplantation (Fig. 6A).The continuous, long-term hematopoietic supply and replenishment of bone marrow-derived cells from 90 dpi donors did not chronically alter host body weights compared to SH→WT mice (Fig. 6B), eliminating this confounding variable from our behavioral analysis.TBI→WT mice displayed significantly poorer forelimb grip strength compared to SH→WT mice (Fig. 6C), but no change in time spent on an accelerating rotarod (Fig. 6D).However, TBI→WT mice exhibited significantly increased depressive-like behavior and cognitive deficits on the tail suspension and Y-maze tests, respectively (Fig. 6E-F).These findings imply that bone marrow cells, independently, can contribute to long-term functional deficits, including memory impairment, following TBI.
Further analysis of the immune system showed high donor reconstitution rates of both chimeric groups (Fig. 6G), with significantly fewer circulating white blood cells and LSK + frequencies in TBI→WT mice (Fig. 6H-I).Consistent with our earlier results, neutrophils showed a sustained decrease in IL1β production in TBI→WT mice (Fig. 6J), and impaired phagocytic engulfment of IgGcoated beads, latex beads, and pHrodo-labeled E.coli particles (Fig. 6K-M).These findings suggest that increased time post-injury results in a persistent and progressive worsening in innate immune function, indicative of bone marrow failure.
Given that long-term reconstitution of otherwise healthy WT mice with chronic TBI donor bone marrow stem cells resulted in neurological dysfunction, we investigated whether injury-induced alterations in bone marrow cells might have neurodegenerative potential.Because the chimeric mice were not head-shielded during irradiation, the resulting DNA damage and neuronal loss provided us with a unique neurodegenerative model system in which to study the neuromodulatory effects of the bone marrow compartment.Following the same 8-month reconstitution paradigm with sham and 90 dpi donor mice (Fig. 7A), we performed NanoString analysis on cortex/hippocampal tissue using the nCounter Neuropathology gene panel.Separation between SH→WT and TBI→WT groups was apparent in the PLSDA plot (Fig. 7B).We found significant enrichment in genes involved in the apoptosis, oxidative phosphorylation, UV response, and complement pathways in TBI→WT compared to SH→WT mice (Fig. 7C).Volcano plot analysis revealed significant increases in Gfap and reductions in L1cam, Gad1, and Fos in TBI→WT relative to SH→WT mice, consistent with astrogliosis and concomitant neuronal loss or dysfunction (Fig. 7D).Heat map analysis of the top 20 most differentially expressed genes further highlight comparative reductions in Fgf12 and Csf1, two growth factors important for maintaining neuronal and microglial homeostasis (Fig. 7E-F).Moreover, we also found decreases in neuron-related genes such as Lmna, Syt4, Rab3a, and Vcp in the cortex/hippocampus of TBI→WT mice.Taken together, our transcriptomic findings support the notion that brain injury-induced changes in the bone marrow compartment can independently drive and progressively worsen ongoing neurodegeneration.

Chimeric mice subjected to TBI show age-dependent microgliosis and leukocyte infiltration
To better understand the chronicity of TBI-induced bone marrow dysfunction and its dynamic regulation of brain function, we evaluated and contrasted the acute neuroinflammatory response to a subsequent TBI in 8-week and 8-month chimeric mice reconstituted with sham and 90 dpi donor cells (Fig. 8A).Shorter time post-injury (90 dpi + 8 weeks reconstitution) was associated with a significant decrease in microgliosis and a downward trend in bone marrow-derived CD45 hi leukocyte infiltration compared to SH→WT controls (Fig. 8B-C).Longer time post-injury (90 dpi + 8 months reconstitution), however, was associated with a significant increase in microgliosis and CD45 hi leukocyte infiltration (Fig. 8D-E).These findings suggest there may be an acute refractory period followed by a progressively increased sensitivity to a repeated TBI which is mediated by bone marrow cells.

The senolytic agent ABT-263 improves behavioral performance of aged mice at baseline but does not attenuate neuroinflammation in the acutely injured brain
Finally, our results implicated TBI-induced bone marrow senescence as a potential driver of neurodegeneration and neurological decline.To address the therapeutic potential of senolytic treatment, we prophylactically treated aged (18-month-old) male WT mice with the Navitoclax (ABT-263), which has been experimentally shown to rejuvenate the aging hematopoietic niche [43].Naïve aged mice were treated with ABT-263 once daily for 2 weeks by oral gavage (Fig. 9A).No statistically significant change in body weight from baseline was seen in either group (Fig. 9B).In line with previous studies [43,52], we observed significant age-related improvements in forelimb grip strength after ABT-263 treatment (Fig. 9C).Moreover, ABT-263 prevented worsening in rotarod performance weeks later (Fig. 9D), and markedly improved gait performance from baseline compared to the vehicle control group (Fig. 9E-H).Surprisingly, however, ABT-263 treatment did not confer protection to acute TBI, as evidenced by equivalent numbers of microglia and infiltrating bone marrow-derived CD45 hi leukocytes (Fig. 9I-L).Collectively, these data suggest that the senolytic drug, ABT-263, has beneficial effects on normal age-related motor function, but do not appear to protect against acute TBI in aged animals.

Discussion
Although there has been increased recognition of the impact of TBI on systemic organ systems, chronic posttraumatic immunological changes have been less well studied, particularly with regard to bone marrow-derived immune cells.Our findings demonstrate that experimental TBI causes chronic activation of the bone marrow, characterized by acute myelopoiesis that is followed by the late emergence of senescence cellular signatures and subsequent failure to produce white blood cells.Reconstituting the immune system of otherwise healthy mice with bone marrow from chronic TBI mice caused innate immune dysfunction and neurological impairment.The nature and degree of changes were dependent on the length of time post-injury.Our data suggest that bone marrow cells undergo cellular reprogramming that appears to be stably propagated by stem/progenitor cells to downstream hematopoietic derivatives, impacting the composition and function of the systemic immune system [44].Importantly, we also show that bone marrow cell alterations following TBI may play a role in promoting neuroinflammation and associated neurological dysfunction.Moreover, after trauma, bone marrow cells appear sensitized to subsequent brain injuries.
Isolating the effects of central and peripheral immunity on TBI outcomes is difficult and not without limitation.The caveats of generating bone marrow chimeric mice in this study include exposure to irradiation and inability to decipher the contribution of specific leukocyte subtypes.In contrast, we argue that not head-shielding provided a low-level neurodegenerative response in the brain that could be further modified in either direction by bone marrow-derived cells.In addition, while the 8wk reconstitution period could be influenced by a pleotropic effect of longer-lived bone marrow cells and short-term hemopoietic stem/progenitor cells, the 8mos reconstitution allowed sufficient time for self-renewal of long-term hematopoietic stem cells and, therefore, was more likely indicative of maladaptive epigenetic imprinting of the descendent immune system.
We and others have previously demonstrated that experimental TBI causes long-term changes in immune function, which increase infection susceptibility and worsen outcomes; these effects are part of broader bidirectional brain-systemic interactions after injury that senstitizes the brain to subsequent challenges [21][22][23][24][25][26].Ritzel et al. demonstrated that moderate-to-severe TBI causes chronic alterations in the peripheral immune system that are reminiscent of accelerated aging [44].Acute stress-induce myelopoiesis was accompanied by neutrophilia and peripheral immune suppression during the early phase.Deficits in phagocytosis and elevated oxidative stress levels persisted for months after injury, associated with the development of leukopenia and bone marrow failure at one-year post-injury [28,53].Importantly, we found that bone marrow-derived macrophage cultures harvested from chronic (90d) TBI mice exhibited significantly higher sensitivity to LPS stimulation compared to macrophages cultured from sham mice [54,55].This is consistent with the concept of "trained immunity", a functional state of the innate immune system that is characterized by long-term epigenetic and metabolic reprogramming of cells associated with potent immune responses [56].These results suggested that TBI causes inherent changes in bone marrow myeloid progenitors that are potentially transmissible and pathogenic.Such impairment in phagocytosis and ROS production in neutrophils were recapitulated in our novel bone marrow chimera model.Moreover, these immune deficits persisted for up to 8-months post-reconstitution, implying that such changes may persist indefinitely.The development of bone marrow failure at chronic timepoints following TBI was further linked to the induction of hematopoietic stem cell senescence.We examined the possibility that alterations in stem/progenitor cells resulted in downstream alterations in the epigenetic regulation of neutrophils, and identified six epigenetic pathway genes that were differentially regulated by chronic TBI: Bcl7c (B-cell CLL/lymphoma 7 protein family member C), Chd3 (chromodomain helicase DNA binding protein 3), Wdhd1 (WD repeat and HMG-box DNA binding protein 1), Smarcad1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1), Tspyl4 (Testis-specific Y-encoded-like protein 4), and Hdgfl3 (Hepatoma-Derived Growth Factor, Related Protein 3).Although the specific role of these epigenetic regulators for innate immune memory following TBI remains to be investigated, posttraumatic epigenetic modifications during adult hematopoiesis may contribute to the pathogenic neuroimmune effects found in TBI→WT mice.
It is generally understood that the early infiltration of bone marrow-derived cells into the injured brain can markedly amplify the neuroinflammatory response to TBI [4].The infiltration of peripheral myeloid cells typically waxes and wanes within the first week of injury [57].Beyond these acute timepoints, however, the capacity for distally located bone marrow cells to modulate neuroinflammation in the brain during the chronic phase of TBI has yet to be established.The present study identified several genes that were upregulated in the brain of TBI→WT chimeric mice after an 8wk reconstitution period.These include CdKn1c (p57/Kip2), Lmnb1 (Lamin B1), CD74, Pld1 (Phospholipase D1), Trp73 (p73), Ung (Uracil DNA Glycosylase), and Slc2a5 (Solute carrier family 2 member 5).CD74 encodes a cell membrane, high-affinity receptor for macrophage migration inhibitory factor (MIF); the latter has recently been shown to promote neurodegeneration and cell death in an experimental model of TBI [58].In addition to genes that regulate the inflammatory response, we identified several genes involved in age-related senescence.For example, p57 and p73 play a critical role in coordinating the cellular response to stress, being able to drive to both apoptosis and cellular senescence [59,60].Upregulation of Ung, a DNA repair gene, suggests that TBI→WT mice may have had further accelerated irradiation-induced DNA damage response [61], while downregulation of Bid, a pro-apoptotic member of the Bcl-2 protein family, suggests involvement in senescent cell formation [62].With extended time post-injury/reconstitution, we saw further perturbations in apoptotic, UV response, oxidative phosphorylation, and complement pathways that have each been previously implicated in chronic neurodegeneration after TBI [63][64][65][66][67][68].Taken together, our findings suggest that peripheral bone marrow cells augment chronic neuroinflammatory responses at a distance and may even accelerate cellular senescence in the brain after injury.
The chronic phase of moderate-to-severe TBI is highlighted by neurological decline, including motor disability and cognitive worsening [69,70].We and others have previously reported long-term neurological deficits in mice using the CCI model [28,29,31,71].In this study, we showed that TBI inherently altered bone marrow cells which could independently drive neurological dysfunction in the absence of primary brain injury.Behavioral deficits were more diverse during the 8wk reconstitution period but persisted at 8 months after reconstitution.It is important to note that we did not observe an increase in CD45 hi bone marrow-derived leukocytes in the brain of chimera groups.Our data indicate TBI chronically alters innate immune cell function.Chronic TBI chimeric mice (TBI→WT) showed elevated plasma concentrations of CCL11, a pro-aging chemokine previously demonstrated to impair cognition and neurogenesis [72].TBI-associated increases in KC/CXCL1 may be due to increased oxidative stress in innate immune cells [73], and further may amplify peripheral tissue inflammation by recruiting CXCR2-positive cells [74].
Our chimera also model provided an opportunity to evaluate the effect of a "repeated" moderate-to-severe TBI specifically on bone marrow cells, although host mice were not directly exposed to prior TBI.We observed that time post-injury affects subsequent responses to TBI.Specifically, increased time post-injury sensitized the immune system to respond more vigorously to TBI, as evidenced by increased bone marrow-derived leukocyte infiltration and secondary microgliosis.Bone marrow responses to another TBI were refractory, with shorter time intervals post-injury, suggesting possible epigenetic memory or immune priming of trauma-related stress signals that may be acutely adaptive [75,76].However, with aging, bone marrow cells may become primed, or rewired for long-lasting trained immunity.Thus, the effects of a single TBI on the bone marrow compartment may decrease or increase sensitivity of these cells to subsequent TBI, depending on the time since the prior injury.
TBI causes premature senescence in numerous cell types [27,77,78].Administration of senolytic drugs has proven beneficial in models of brain injury and neurodegenerative disease [43,52,78,79].However, few studies to date have examined senolytic therapies in preclinical TBI studies [78].We selected ABT-263 based on previous reports of its ability to rejuvenate the aging hematopoietic stem cell niche and improve several parameters of aging [43,52].Although we did not observe a protective effect of pre-treatment on TBI-mediated neuroinflammation in aged mice, we found that the baseline improvements in behavioral performance that are consistent with previous reports [43,52].Moreover, future studies employing senolytic therapies in TBI should evaluate dose ranges, timing and duration of administration, and longer-term follow-up.
Finally, this study was not without limitation.Females were excluded because whole body irradiation causes uterine and ovarian damage, follicular destruction, alterations in sex hormone production, and osteoporosis [80,81].In addition, our study included anesthetized, but unoperated, animals to serve as the control group, but not craniotomized mice.Craniotomy alone is now recognized to cause mild brain injury with acute and persistent changes in inflammation and behavior that would confound this study [22,82,83].Lastly, in some experiments, transcriptomic profiling was performed using whole brain hemisphere tissue, which limited our neuroanatomical understanding of structure-function changes in areas critical for learning and memory such as the hippocampus.Nevertheless, our results represent gene expression values on a larger scale which illustrate the overall impact of bone marrow cell-derived cells on brain function.

Conclusion
The present study highlights the importance of the brainbone marrow axis in shaping the outcome trajectory of chronic brain injury as we age.The inextricable link between the immune system and the brain may provide an alternative therapeutic strategy to interfere with or slow neurodegenerative disease progression that is less invasive, more accessible, far reaching, and self-renewing.These findings support the notion that biomarkers of blood leukocyte health reflect brain health and the trajectory of neurological disease.

Fig. 1 Fig. 2 (
Fig. 1 Femur bone marrow responses at acute and chronic stages following TBI.(A-E) Flow cytometry was performed in whole blood and femur bone marrow at 1, 3, and 7d post-injury.TBI increased the percentage of myeloid cells (% CD11b + of CD45 + cells) in blood (A) and bone marrow (B).Percentages of lineage-c-Kit + Sca1+ (LSK+) stem/progenitor cells were elevated in bone marrow after TBI (C).A representative dot plot of LSK + populations at 3d TBI is indicated in the left panel of C. Quantification of LSK + cells is shown in the right panel of C. The mean fluorescence intensity (MFI) of cell cycle markers Ki-67 (D) and PCNA (E) were seen significantly increased in the LSK + population at 1d post-injury.n = 6-10 mice/group.(F-H) The proliferative status of LSK + cells was assessed at 120 days post-injury (dpi).n = 4 (Sham) and 6 (TBI) mice/group.(I-J) Chronic TBI at 365 dpi caused a significant reduction in circulating (I) and bone marrow (J)-derived white blood (CD45+) cells.n = 6-11(blood) and 4-6 (bone marrow) mice/group.For all histograms, light gray = fluorescence minus one (FMO) control.Data were analyzed using one-way ANOVA group analysis with Tukey's test for multiple comparisons (A-C) or Mann-Whitney for two group comparisons (D-J).**p < 0.01, *p < 0.05

(Fig. 3
Fig. 3 Blood neutrophil transcriptional profiles and spleen neutrophil functions are chronically dysregulated during the chronic stages of TBI.Bulk RNAseq was performed on blood neutrophils at 120 dpi.(A) PLSDA of all normalized gene counts revealed a clear separation of aged sham and aged TBI samples into individual groups across the first two principal components.n = 3 mice/group.(B) Pathways involved in biosynthetic processes and translation were down-regulated after TBI, whereas those involved in stress and viral defense responses were up-regulated.(C) Heatmap of unsupervised clustering of the top 30 differentially expressed genes.Color coding was based on z-score scaling.(D-E) Sample-level enrichment analysis (SLEA) for chromatin remodeling pathway (D) and epigenetic regulation (E) of gene expression.(F) Venn Diagram of chromatin remodeling pathway, epigenetic regulation of gene expression pathway, and differentially expressed (DE) epigenetic pathway genes genes between AT vs. AS.(G) Six out of 268 genes from chromatin remodeling pathway were differentially expressed after TBI, including Smarcad1, Tspyl4 and Hgfl3 up-regulated after TBI and Bcl7c, Chd3 and Wdhd1 down-regulated after TBI.(H-I) Neutrophil function including phagocytosis (MFI of pHrodo E. coli., H) and oxidative stress levels [mean fluorescence intensity (MFI) of DCF, I] from the spleen was evaluated by flow cytometry.n = 4-6 mice/group.For all histograms, light gray = fluorescence minus one (FMO) control.Data were analyzed using Mann-Whitney for two group comparisons.**p < 0.01, *p < 0.05.AS: aged sham; AT: aged TBI

Fig. 4
Fig. 4 Bone marrow cells transplanted from chronic TBI mice reprogram host innate immune function in the absence of the brain injury environment.(A) Using a novel bone marrow transplantation approach, sham and 90 days post-injury (dpi) donor cells were transplanted into irradiated, congenic WT recipients.Femur bone marrow cells were harvested from 90 dpi and sham congenic Pepboy (CD45.1)donor mice, and 100 ml of BM cells (1 × 10 6 cells/mouse) were intravenously injected by retroorbital injection in recipient WT (CD45.1)C57BL/6 mice.Mice were allowed to reconstitute for 8 weeks following transplantation.WT naïve (non-irradiated) mice were sex-and age-matched to both chimera groups.(B-D) Blood donor cells (CD45.1,B-C) and leukocyte (CD45+, D) were counted using flow cytometry.n = 5-6 mice/group.(E-G) Circulating and bone marrow-derived Ly6G + neutrophils from TBI→WT chimeric mice exhibited reductions in 0.5-1.0mm Red Beads + cells and increase in the mean fluorescence intensity (MFI) of DHR123 + ROS.Left panels of E-F are representative dot plots.n = 5-6 mice/group.(H-I) Bone marrow-derived Ly6G + neutrophils from TBI→WT chimeric mice showed significant reductions in TNF and IL-1b production.Left panels of H are representative dot plots of TNF + cells.n = 7 mice/group.For all histograms, light gray = fluorescence minus one (FMO) control.Data were analyzed using one-way ANOVA group analysis with Tukey's test for multiple comparisons (E-G) or Student's T-test for two group comparisons (H-I).****P < 0.0001, **p < 0.01, *p < 0.05.SH: Sham, WT wildtype

Fig. 5
Fig. 5 Short-term reconstitution of bone marrow cells transplanted from chronic TBI mice affect host neurological function and neuroinflammatory signaling.(A) Chimera paradigm is illustrated.WT naïve (non-irradiated) mice were sex-and age-matched to both chimera groups.Mice were allowed to reconstitute for 8 weeks following transplantation.n = 11-16 mice/group.(B) Body weight of animal was monitored before and at 4 and 8 weeks (wks) after irradiation (IR).(C-F) Graphs showed parameters (body speed, stride length, swing speed, and swing durations) of CatWalk gait analysis tested at 8 weeks after IR. (G-J) Locomotor function and depressive-like behavior were assessed in the accelerating rotarod (G), Grip strength (H), and Open field (I), and tail suspension (J) tests.(K) Short-term spatial working memory was evaluated in Y-maze test.(L-N) Plasma cytokine levels were examined using multiplex Enzyme-Linked Immunosorbent Assay (ELISA).The pro-aging/neurodegenerative cytokines IP-10, CCL11, and KC were significantly increased in TBI→WT mice compared to controls.n = 10-13 mice/group.(O-Q) Brain microglia and CD45 hi leukocytes were detected using flow cytometry.A representative dot plot of leukocyte populations in the brain is illustrated in O. Quantification of CD45 int CD11b + microglia (P) and CD45 hi CD11b + myeloid cells (Q) are shown.(R-V) The transcriptomic profile of brain tissue at 8 weeks after IR was assessed using the NanoString nCounter Neuroinflammation panel.n = 4 mice/group.The Partial least squares-discriminant analysis (PLSDA) is illustrated (R).Heatmap of genes that are associated with Microglial Function (S), Inflammatory Signaling (T), and the Innate Immune Response (U) are shown.Color coding was based on Average Transcription Counts (normalized by housekeeping genes).Volcano plot analysis is indicated (V).Data were analyzed using one-way ANOVA group analysis with Tukey's test for multiple comparisons.W: WT Naive; S: SH→WT; T: TBI→WT.****P < 0.0001, ***p < 0.001, **p < 0.01, *p < 0.05.SH: Sham

Fig. 6
Fig. 6 Long-term reconstitution of bone marrow cells transplanted from chronic TBI mice causes innate immune dysfunction and neurological decline in host mice.(A) Chimera paradigm is illustrated.Mice were allowed to reconstitute for 8 months following transplantation.WT naïve (non-irradiated) mice were sex-and age-matched to both chimera groups.(B) Body weight was monitored at 8 months after irradiation (IR).(C-F) A battery of neurobehavioral tests was performed to assess forelimb grip strength (C), time on rotarod (D), time immobility in the tail suspension test (E), and cognitive function in Y-maze test (F).(G-H) Blood donor cells (CD45.1,G) and leukocyte (CD45+, H) were counted using flow cytometry.(I) Percentages of bone marrow LSK + frequencies were detected.(J) Spleen Ly6G + neutrophils were examining using flow cytometry, showing reduced mean fluorescence intensity (MFI) of IL-1b + cells in TBI→WT mice compared to SH→WT animals.Light gray = fluorescence minus one (FMO) control.(K-M) Phagocytic engulfment of IgG-coated beads (K), latex beads (L), and pHrodo-labeled E.coli particles (M) were detected in spleen Ly6G + neutrophils.Left panels of K-M are representative dot plots.Data were analyzed using one-way ANOVA group analysis with Tukey's test for multiple comparisons (B-I) or Student's T-test for two group comparisons (J-M).n = 7 mice/group.****P < 0.0001, **p < 0.01, *p < 0.05.SH: Sham

Fig. 7
Fig. 7 Long-term reconstitution of bone marrow cells transplanted from chronic TBI mice worsens ongoing neurodegeneration at the transcriptomic level in host brains.The transcriptomic profile of whole brain hemisphere tissue at 8 months after irradiation was assessed using the NanoString nCounter Neuropathology panel.(A) Chimera paradigm is illustrated.(B) Partial least squares-discriminant analysis (PLSDA) plot showed a separation of clusters between the TBI→WT (T) and SH→WT (S) groups.(C) Pathway enrichment analysis with the MSigDB Hallmark 2020 database revealed that several gene networks related to apoptosis, oxidative phosphorylation, UV response, and complement pathways were enriched in TBI→WT compared to SH→WT mice.(D) Volcano plot analyses are shown between two groups.(E) Heat map analysis of the top 20 most differentially expressed genes are indicated.Color coding was based on z-score scaling.(F) Normalized transcription count of the top 9 genes presented as Log10 abundance.n = 4 mice/group

Fig. 8 Fig. 9
Fig. 8 The acute neuroinflammatory response to a subsequent TBI is sensitized with increasing time post-injury.(A) Chimera paradigm is illustrated.Mice reconstituted for 8 weeks following transplantation were subjected to TBI. (B) Representative dot plots of immune populations in the ipsilateral brain hemisphere at 48 h after TBI.(C-D) Quantification of CD45 int CD11b + microglia and CD45 hi CD11b + -infiltrating myeloid cell counts per hemisphere are shown for Sham and TBI in chimeric mice.n = 4-8 mice/group.(E) Chimeric mice reconstituted for 8 months following transplantation were subjected to TBI. (F) A representative dot plot of leukocyte populations in the ipsilateral brain at 48 h after TBI.(G-H) Quantification of CD45 int CD11b + microglia (G) and CD45 hi CD11b + myeloid cells (H) are shown.n = 6-8 mice/group.Data were analyzed using two-way ANOVA group analysis with Tukey's test for multiple comparisons.**p < 0.01, *p < 0.05.SH: Sham