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Table 3 Expression of genes related to antigen presentation within the spinal cord during the disease course of MOG-induced EAE

From: Novel role for SLPI in MOG-induced EAE revealed by spinal cord expression analysis

Probeset Gene healthy stddev acute stddev remission stddev relapsing stdev
H33922_f_at RT1 class Ib gene 224.7 35.3 1085.7 102.5 382.8 88.0 677.9 350.6
L40362_f_at   242.0 33.1 913.6 141.0 463.3 84.2 523.5 250.4
M11094_g_at   50.0 9.2 182.4 36.4 117.8 13.4 114.7 32.7
M11071_f_at   919.4 157.0 3552.1 547.2 2325.2 649.9 2208.1 612.6
M24026_f_at   381.6 52.5 1476.6 78.8 915.2 135.4 1016.0 408.4
M24324_f_at   420.3 27.9 1904.7 121.0 1016.5 195.5 1277.4 592.5
M31018_f_at   484.4 56.8 2383.8 392.3 1554.6 336.0 1601.8 614.5
M31038_at   30.5 4.2 180.4 36.4 54.4 4.3 139.7 110.0
rc_AA858651_f_at   386.5 82.9 1585.7 203.2 887.5 152.6 982.4 295.6
rc_AA945159_s_at   115.0 69.6 502.1 439.7 667.2 69.0 304.2 271.3
rc_AI103500_f_at   290.1 9.2 2175.2 48.2 513.8 100.9 1069.4 780.4
rc_AI176358_f_at   299.3 20.7 1176.6 270.5 611.3 42.9 733.8 256.9
rc_AI235223_at   213.6 41.4 947.6 95.3 844.3 112.6 714.9 227.9
AF025308_f_at MHC class Ib antigen (RT1.Cl) 127.5 11.9 696.2 190.0 161.7 19.6 413.8 335.9
L40364_f_at MHC class I RT1.O type 149 processed pseudogene 438.8 41.1 1100.0 178.2 577.9 87.3 722.8 470.2
AF029240_at MHC class Ib RT1.S3 21.8 8.6 94.2 23.8 55.2 4.2 35.6 13.9
AF029240_g_at   99.5 9.0 267.9 94.7 185.6 48.2 135.9 50.5
rc_AI235890_s_at   34.1 15.5 228.3 13.5 55.6 21.5 63.6 42.4
AF074608mRNA_f_at MHC class I antigen (RT1.EC2) 186.2 21.9 612.1 93.6 493.7 119.8 496.0 116.0
M64795_f_at MHC class I antigen gene (RT1-u haplotype) 42.1 6.0 322.6 37.7 59.5 13.0 179.8 148.6
rc_AI235223_at RT1 class I, A3 213.6 41.4 947.6 95.3 844.3 112.6 714.9 227.9
X57523_at Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) 78.1 11.6 292.0 108.8 88.2 24.2 123.5 44.1
X57523_g_at   21.9 2.9 308.5 105.5 86.4 31.8 66.2 30.7
X63854_at Transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) 44.8 9.5 125.4 26.0 60.6 1.1 74.5 23.5
rc_AI170268_at Beta-2-microglobulin 738.0 270.5 2559.2 864.8 4295.5 654.1 2487.2 1142.1
K02815_s_at Butyrophilin-like 2 (MHC class II associated) 86.3 2.8 869.9 155.5 485.3 199.1 519.6 306.1
M15562_at MHC class II RT1.u-D-alpha chain mRNA, 3' end 77.3 5.9 1441.2 355.7 1088.1 375.5 765.1 244.6
M15562_g_at   205.6 126.3 4436.1 1998.8 5944.8 1630.7 3230.7 1453.0
Z49761_at Major histocompatibility complex, class II, DM alpha 21.5 10.3 343.5 52.4 96.9 5.7 125.4 66.4
U31598_s_at   95.9 29.7 799.4 114.3 108.6 12.0 266.3 169.8
U31599_at Major histocompatibility complex, class II, DM beta 4.5 1.9 256.8 107.7 22.7 6.6 68.0 63.0
U31599_g_at   9.9 2.5 441.4 69.5 69.1 9.8 156.8 116.4
rc_AI171966_at   42.7 8.0 1233.0 256.7 433.0 94.2 428.3 286.4
X13044_at CD74 antigen (invariant polpypeptide of major histocompatibility class II antigen-associated) 89.2 22.8 2866.0 381.1 2330.7 638.0 1867.9 218.7
X13044_g_at   86.5 22.6 3206.0 873.7 3432.7 796.6 2228.7 364.2
X14254cds_g_at   73.3 18.6 1947.4 288.9 1298.5 384.1 1417.0 427.4
X53054_at MHC class II DLA DRB1 beta chain 1.9 0.3 181.8 49.4 99.7 30.8 101.5 28.4
X53054_g_at   40.3 7.2 788.7 134.2 745.6 233.2 556.7 157.9
rc_AI045321_at Class II, major histocompatibility complex, transactivator 41.0 11.6 245.2 38.0 124.3 30.3 61.7 21.0
rc_AI228153_s_at MHC class II antigen RT1.B-1 beta-chain 25.3 5.9 963.5 320.2 720.3 126.6 451.0 228.3
X56596_at   51.0 18.3 1064.2 72.4 400.0 84.6 439.8 208.1
M36151cds_s_at   39.1 6.0 1090.4 348.8 250.9 68.0 554.4 471.8