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Table 2 Expression levels of highly and weakly expressed immune/inflammation-related genes in the normal cochlear sensory epithelium

From: Molecular profile of cochlear immunity in the resident cells of the organ of Corti

Rank

Symbol

Expression levels (FPKM)

Rank

Symbol

Expression level (FPKM)

Mean

SD

Mean

SD

Highly-expressed genes

1

Spp1

8,974.98

2,782.16

31

Hbb-b2

568.64

366.51

2

Rps14

7,445.93

4,423.91

32

Gapdh

541.79

128.01

3

Gpx2

5,096.75

788.79

33

Tmem176a

506.73

52.39

4

Apoe

4,413.41

1,207.30

34

Vimp

455.65

61.00

5

Trf

4,209.45

2,351.89

35

Bcap31

455.02

43.53

6

Hba-a2

2,849.79

1,583.28

36

Atpif1

436.87

35.55

7

Gpx4

2,757.61

865.85

37

Nfkbia

377.97

91.52

8

Rps19

2,593.07

868.93

38

Hmgb1

376.21

22.02

9

Lgals1

2,375.43

434.34

39

Pla2g7

362.19

109.04

10

Rps6

1,867.83

447.50

40

Serpinf1

346.23

188.45

11

Rpl13a

1,751.85

658.77

41

Phpt1

340.86

71.68

12

Prdx1

1,711.38

428.22

42

Gnas

339.87

88.70

13

Nme2

1,278.45

281.30

43

Cyba

335.33

47.53

14

Selk

1,253.00

297.47

44

Psme2

329.11

94.80

15

Ifitm2

1,119.77

252.30

45

Fkbp1a

327.71

33.60

16

Car2

1,063.46

490.25

46

Tsc22d3

319.84

88.51

17

Rps24

1,038.78

447.60

47

Calr

307.89

79.13

18

Cd81

1,032.72

196.45

48

Nme1

280.60

45.34

19

B2m

1,003.31

23.57

49

Fcgrt

275.06

19.30

20

Prdx2

983.57

113.75

50

Rgcc

265.59

43.20

21

Tmem176b

914.41

114.35

51

Hprt

250.51

56.23

22

Park7

900.11

33.82

52

Prelid1

225.27

44.14

23

Ifitm3

871.64

30.05

53

Bnip3

225.24

41.48

24

Crip2

828.16

122.21

54

Psmb4

224.41

32.60

25

Sod1

789.94

43.52

55

Psma1

216.16

29.35

26

Fam213a

760.94

148.39

56

S100a8

204.00

138.29

27

Mif

749.95

123.46

57

Bnip3l

200.30

28.93

28

Id2

645.03

97.69

58

Wdr61

199.40

33.21

29

Gpx1

617.58

229.02

59

Hsp90aa1

198.63

48.34

30

Ndfip1

611.79

51.31

60

Gstp1

198.18

15.56

Weakly-expressed genes

1

Ptprj

0.45

0.12

16

Il2ra

0.31

0.13

2

Sh2b2

0.44

0.28

17

Nbeal2

0.30

0.16

3

Adar

0.44

0.15

18

Cnr2

0.28

0.06

4

Camk1d

0.43

0.21

19

Cxcr4

0.27

0.12

5

Tcf7

0.42

0.38

20

Tbkbp1

0.27

0.16

6

Lcp2

0.42

0.25

21

C4b

0.27

0.25

7

Rnasel

0.40

0.29

22

Myo1f

0.25

0.15

8

Cd55

0.37

0.37

23

Ppargc1b

0.24

0.20

9

Mcph1

0.37

0.13

24

Prkdc

0.23

0.09

10

Malt1

0.37

0.06

25

Fzd5

0.22

0.13

11

Nfam1

0.35

0.19

26

Oas3

0.22

0.02

12

Ercc2

0.34

0.15

27

Stk10

0.20

0.06

13

Ddx60

0.33

0.14

28

Cblb

0.20

0.02

14

Itgam

0.33

0.09

29

Tnfrsf1b

0.20

0.06

15

Jak3

0.33

0.18

30

Gpam

0.17

0.03

  1. Data were obtained from four biological repeats and are ranked in order of abundance from highest to lowest. FPKM: Fragments per kilobase of exon model per million mapped reads.