Table 3 Comparison of RNA-Seq and qRT-PCR data in 4Â h JQ1 and LPS-treated BV-2 microglia cells
RNA-Seq fold change | qRT-PCR fold change | ||||
|---|---|---|---|---|---|
Gene symbol | Gene accession ID | LPS_4 h | LPS + JQ1_4 h | LPS_4 h | LPS + JQ1_4 h |
Ccl12 | NM_011331 | 29.79 | 13.89 | 25.33 | 13.99 |
Il1a | NM_010554 | 66.01 | 31.18 | 77.23 | 39.68 |
Ccl7 | NM_013654 | 39.89 | 18.24 | 32.02 | 10.68 |
Irf1 | NM_001159393 | 17.02 | 4.25 | 17.61 | 6.63 |
Irf9 | NM_001159418 | 4.89 | 2.90 | 5.71 | 2.23 |
Cxcl10 | NM_021274 | 88.25 | 82.02 | 70.02 | 52.03 |
Ccl2 | NM_011333 | 42.15 | 21.03 | 25.69 | 16.35 |
Ccl4 | NM_013652 | 41.02 | 34.01 | 34.52 | 24.55 |