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Table 2 Target identity of the SCI-related antibody responses

From: Antibody profiling identifies novel antigenic targets in spinal cord injury patients

Clone

Translated cDNA product

Size (amino acids)

Homology on protein level

Coding

 UH.SCI.2

TEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK*

57

(56/56) 26S proteasome non-ATPase regulatory subunit 4 (PSMD4)

 UH.SCI.5

HRVVDLMAHMASKE*

14

(13/13) glyceraldehyde-3-phosphate dehydrogenase (GAPDH)

 UH.SCI.6

TFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHADFFNDFEDLFDDDDIQ*

50

(49/50) myeloma-overexpressed gene 2 protein (MYEOV2)

 UH.SCI.7

HEFFEHE*

7

(7/7) protein S100-B (S100B)

 UH.SCI.19

PVETYTVNFGDF*

12

(11/11) adipocyte enhancer-binding protein 1 (AEBP1)

Non-coding

 UH.SCI.1

IKTVTSQ*

7

(6/7) transmembrane protein 236 (TMEM236)

 UH.SCI.3

TNNFITSNKN*

10

(6/6) calcium-activated chloride channel regulator 2 (CLCA2)

 UH.SCI.4

PLKDIIDNI*

9

(6/6) Di-N-acetylchitobiase precursor (CTBS)

(6/8) poly(A)-specific ribonuclease PARN (PARN)

(6/6) TBC1 domain family member 2B (TBC1D2B)

 UH.SCI.8

NSSKTYVGTSDKVQTPSRDLGCPLGSHCSLSLLT*

34

No significant similarity found

 UH.SCI.9

NSELLSNKSALHKFIKYAFWI*

21

(12/19) E3 ubiquitin-protein ligase HACE1 (HACE1)

 UH.SCI.10

PFFTVPIPRPGA*

12

(8/8) F-box only protein 42 (FBXO42)

 UH.SCI.11

EFFDNSRKVDD*

11

(6/8) Ras/Rap GTPase-activating protein SynGAP (SYNGAP1)

 UH.SCI.12

NSKHSLKS*

8

(6/7) zinc finger protein 148 (ZNF148)

 UH.SCI.13

EDKT*

4

(4/4) Tax1-binding protein 3 (TAX1BP3)

 UH.SCI.14

TQEGAGSERGVITTF*

15

(10/14) receptor-type tyrosine-protein phosphatase eta (PTPRJ)

 UH.SCI.15

TEGKEQERSDKDE*

13

(7/9) Espin (ESPN)

 UH.SCI.16

QGEDKISVY*

9

(6/6) Midasin (MDN1)

 UH.SCI.17

NSLHSLLGQKNND*

13

(10/13) Zinc finger protein 28 (ZNF28)

 UH.SCI.18

QRLFRQSSSQELLGCGSKTLMGGEGWLLEEGRSQTGQTVLLTPSPAQRALPLWPLLQTPALTHTPLGLHSFALKDLPKSPFPCLASPLRRERYLQNWVGGMSMNCPSIWDMLHQSERENK

120

No significant similarity found

  1. *stop codon