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Table 1 Target sequences used to design custom CodeSet for nCounter assay

From: Complex molecular and functional outcomes of single versus sequential cytokine stimulation of rat microglia

Gene

Gene accession #

Target sequence

Aif1 (Iba1)

NM_017196.2

ATCGATATTATGTCCTTGAAGCGAATGCTGGAGAAACTTGGGGTTCCCAAGACCCATCTAGAGCTGAAGAAATTAATTAGAGAGGTGTCCAGTGGCTCCG

Ccl22

NM_057203.1

TACATCCGTCACCCTCTGCCACCACGTTTCGTGAAGGAGTTCTACTGGACCTCAAAGTCCTGCCGCAAGCCTGGCGTCGTTTTGATAACCATCAAGAACC

Cd11b (Itgam)

NM_012711.1

CATCCCTTCCTTCAACAGTAAAGAAATATTCAACGTCACCCTCCAGGGCAATCTGCTATTTGACTGGTACATCGAGACTTCTCATGACCACCTCCTGCTT

Cd68 (ED1)

NM_001031638.1

CTCTCATTCCCTTACGGACAGCTTACCTTTGGATTCAAACAGGACCGACATCAGAGCCACAGTACAGTCTACCTTAACTACATGGCAGTGGAATACAATG

Cd163

NM_001107887.1

CCTCTGTAATTTGCTCAGGAAACCAATCGCATACACTGTTGCCATGTAGTTCATCATCTTCGGTCCAAACAACAAGTTCTACCATTGCAAAGGACAGTGA

C1r

XM_001061611.1

ACAAAGACCTTATGGGTTATGTCAGCGGCTTCGGGATAACAGAAGATAAAATAGCTTTTAATCTCAGGTTTGTCCGTCTGCCCATAGCCGATCGAGAGGC

Cybb (Nox2)

NM_023965.1

CAGTACCAAAGTTTGCCGGAAACCCTCCTATGACTTGGAAATGGATCGTGGGTCCCATGTTCCTGTATCTGTGTGAGAGGCTGGTGCGGTTTTGGCGATC

Ptgs2 (COX-2)

NM_017232.3

TTCGGAGGAGAAGTGGGTTTTAGGATCATCAACACTGCCTCAATTCAGTCTCTCATCTGCAATAATGTGAAAGGGTGTCCCTTTGCCTCTTTCAATGTGC

Cx3cr1

NM_133534.1

ATGTGCAAGCTCACGACTGCTTTCTTCTTCATTGGCTTCTTTGGGGGCATATTCTTCATCACCGTCATCAGCATCGACCGGTACCTCGCCATCGTCCTGG

FcγR1a

NM_001100836.1

TGATGGATCATACTGGTGCGAGGTAGCCACGGAGGACGGCCGTGTCCTTAAGCGCAGCACCAAGTTGGAGCTATTTGGTCCCCAGTCATCAGATCCTGTC

FcγR2b

NM_175756.1

CTGGTCCAAGGAATGCTGTAGATATGAAAGAAAACATCTAGAGTCCCTTCTGTGAGTCCTGAAACCAACAGACACTACGATATTGGTTCCCAATGGTTGA

FcγR3a

NM_207603.1

GACTCTTGTTTGCAATAGACACAGTGCTGTATTTCTCGGTGCAGAGGAGTCTTCAAAGTTCCGTGGCAGTCTATGAGGAACCCAAACTTCACTGGAGCAA

Gusb

NM_017015.2

TCATTTGATCCTGGATGAGAAACGAAAAGAATATGTCATCGGAGAGCTCATCTGGAATTTTGCTGACTTCATGACGAACCAGTCACCACTGAGAGTAACA

Havcr2 (TIM-3)

NM_001100762.1

CGATGAAATTAAGGACTCTGGAGAAACTATCAGAACTGCTGTCCACATTGGAGTAGGCGTCTCTGCTGGGCTGGCCCTGGCACTTATTCTTGGTGTTTTA

Hprt1

NM_012583.2

AGCTTCCTCCTCAGACCGCTTTTCCCGCGAGCCGACCGGTTCTGTCATGTCGACCCTCAGTCCCAGCGTCGTGATTAGTGATGATGAACCAGGTTATGAC

Hvcn1 (Hv1)

XM_006249369.2

ACCAAGAGGATGAGCAGGTTCTTGAAGCACTTCACAGTGGTGGGGGACGACTACCACACCTGGAATGTCAACTACAAGAAGTGGGAGAACGAGGAGGATG

Il6

NM_012589.1

GGAACAGCTATGAAGTTTCTCTCCGCAAGAGACTTCCAGCCAGTTGCCTTCTTGGGACTGATGTTGTTGACAGCCACTGCCTTCCCTACTTCACAAGTCC

Kcna3 (Kv1.3)

NM_019270.3

GCCACCTTCTCCAGAAATATCATGAACCTGATAGACATTGTAGCCATCATCCCTTATTTTATTACTCTGGGCACTGAGCTGGCTGAGCGACAGGGTAATG

Kcnj2 (Kir2.1)

NM_017296.1

GTTCTTTGGCTGTGTGTTTTGGTTGATAGCTCTGCTCCACGGGGATCTGGATGCTTCTAAAGAGAGCAAAGCGTGTGTGTCTGAGGTCAACAGCTTCACG

Kcnn4 (KCa3.1)

NM_023021.2

TACGTCTCTACCTGGTGCCTCGCGCGGTACTTCTGCGTAGCGGGGTCCTGCTCAACGCGTCTTACCGCAGCATCGGGGCGCTCAACCAAGTCCGATTCCG

Mrc1

NM_001106123.1

CTTTGGAATCAAGGGCACAGAGCTATATTTTAACTATGGCAACAGGCAAGAAAAGAATATCAAGCTTTACAAAGGTTCCGGTTTGTGGAGCAGATGGAAG

Msr1 (SR-A)

NM_001191939.1

CACGTTCCATGACAGCATCCCTTCCTCACAACACTATAAATGGCTCCTCCGTTCAGGAGAAACTGAAGTCCTTCAAAGTTGCCCTCGTCGCTCTCTACCT

Myc

NM_012603.2

ACCGAGGAAAACGACAAGAGGCGGACACACAACGTCTTGGAACGTCAGAGGAGAAACGAGCTGAAGCGTAGCTTTTTTGCCCTGCGCGACCAGATCCCTG

Ncf1

NM_053734.2

TCCATTCCCAGCATCCCATAATTGGGCTTGTCCGTGTTCCAACATCTGGGCGGAATTTCACAGCCAAAGGTCAAGAGGACTGCTGTTACGTTCAAGGTCG

Nos2 (iNOS)

NM_012611.2

ACGGGACACAGTGTCGCTGGTTTGAAACTTCTCAGCCACCTTGGTGAGGGGACTGGACTTTTAGAGACGCTTCTGAGGTTCCTCAGGCTTGGGTCTTGTT

Nox1

NM_053683.1

CCGAGAAAGAAGATTCTTGGCTAAATCCCATCCAGTCTCCAAACGTGACAGTGATGTATGCAGCATTTACCAGTATTGCTGGCCTTACTGGAGTGGTCGC

Nox4

NM_053524.1

TGTTGGACAAAAGCAAGACTCTACATATCACCTGTGGCATAACTATTTGTATTTTCTCAGGTGTGCATGTAGCTGCCCACTTGGTGAACGCCCTGAACTT

P2ry6

NM_057124.2

TGGCCCAACATGCCTGGCCCTCCAAAATTTCTATGTCAACCACAAAACTAAGACACCTGTGTTTCGGGGACTGGTCAGTTCATGCTTGTTATACCAGAAT

Orai1

NM_001013982.1

GCCTTCTCCACCGTCATCGGGACGCTGCTTTTCCTGGCCGAAGTCGTGCTGCTCTGCTGGGTGAAGTTCTTACCGCTCAAGAGGCAGGCGGGACAGCCAA

Orai3

NM_001014024.1

ACCTGTAATGTGCTTTACAGTTGGCATCCTGGGAGAGATTTTACATAGGCTCCTCAGATGAACCACTTTACACTTGGTGACTTGTGGTGGTGTGTCCCAC

Rpl32

NM_013226.2

CATCGTAGAAAGAGCAGCACAGCTGGCCATCAGAGTCACCAATCCCAACGCCAGGCTACGCAGCGAAGAGAATGAATAGATGGCTTGTGTGCCTGTTTTG

Sirpa

NM_013016.2

AGGACATTCATTCTCGGGTCATCTGCGAGGTAGCCCACGTCACCTTGGAAGGACGCCCGCTTAATGGGACCGCTAACTTTTCTAACATCATCCGAGTTTC

Stim1

NM_001108496.2

TATCTATCGTGATTGGTGTGGGTGGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCTAAGGAGCACATGAAGAAAATGATGAAGGATCTGGAAGGATT

Stim2

NM_001105750.2

TTCACAATTGGACGCTTGAGGATACCCTGCAGTGGTTGATAGAATTTGTTGAACTCCCACAATACGAGAAGAATTTTAGGGATAATAATGTGAAAGGAAC

Tnfa

NM_012675.2

GGTGATCGGTCCCAACAAGGAGGAGAAGTTCCCAAATGGGCTCCCTCTCATCAGTTCCATGGCCCAGACCCTCACACTCAGATCATCTTCTCAAAACTCG

Trem2

NM_001106884.1

TCCGGCTGGCTGAGGAAGGGTGCCATGGAACCTCTCCACGTGTTTGTCCTGTTGCTGGTCACAGAGCTGTCCCAAGCCCTCAACACCACAGTGCTGCAGG