Krüppel-like factor 4, a novel transcription factor regulates microglial activation and subsequent neuroinflammation
© Kaushik et al; licensee BioMed Central Ltd. 2010
Received: 8 July 2010
Accepted: 15 October 2010
Published: 15 October 2010
Activation of microglia, the resident macrophages of the central nervous system (CNS), is the hallmark of neuroinflammation in neurodegenerative diseases and other pathological conditions associated with CNS infection. The activation of microglia is often associated with bystander neuronal death. Nuclear factor-κB (NF-κB) is one of the important transcription factors known to be associated with microglial activation which upregulates the expression of inducible nitric oxide synthase (iNOS), cyclooxygenase-2 (Cox-2) and other pro-inflammatory cytokines. Recent studies have focused on the role of Krüppel-like factor 4 (Klf4), one of the zinc-finger transcription factors, in mediating inflammation. However, these studies were limited to peripheral system and its role in CNS is not understood. Our studies focused on the possible role of Klf4 in mediating CNS inflammation.
For in vitro studies, mouse microglial BV-2 cell lines were treated with 500 ng/ml Salmonella enterica lipopolysacchride (LPS). Brain tissues were isolated from BALB/c mice administered with 5 mg/kg body weight of LPS. Expressions of Klf4, Cox-2, iNOS and pNF-κB were evaluated using western blotting, quantitative real time PCR, and reverse transcriptase polymerase chain reactions (RT-PCRs). Klf4 knockdown was carried out using SiRNA specific for Klf4 mRNA and luciferase assays and electromobility shift assay (EMSA) were performed to study the interaction of Klf4 to iNOS promoter elements in vitro. Co-immunoprecipitation of Klf4 and pNF-κB was done in order to study a possible interaction between the two transcription factors.
LPS stimulation increased Klf4 expression in microglial cells in a time- and dose-dependent manner. Knockdown of Klf4 resulted in decreased levels of the pro-inflammatory cytokines TNF-α, MCP-1 and IL-6, along with a significant decrease in iNOS and Cox-2 expression. NO production also decreased as a result of Klf4 knockdown. We found that Klf4 can potentially interact with pNF-κB and is important for iNOS and Cox-2 promoter activity in vitro.
These studies demonstrate the role of Klf4 in microglia in mediating neuroinflammation in response to the bacterial endotoxin LPS.
Inflammation in brain occurs in several neurodegenerative diseases and in response to pathogens invading the Central Nervous System (CNS). Several cell types have been implicated in inflammation mediated neurodegeneration, including microglia and astroglia . Microglia, the resident macrophages of the CNS is the key cell type which responds to brain injuries or immunological stimuli such as endotoxins and becomes activated [2, 3]. Upon activation, these cells release several pro- and anti-inflammatory cytokines in order to clear the pathogens and cellular debris from the brain tissue . An exaggerated response by microglia, however, can result in neuronal damage indirectly by the secretion of cytokines or even directly by the phagocytosis of neurons  which can be detrimental to the normal functioning of the CNS . Microglia is involved in inflammation initiated during several neurodegenerative diseases including Alzheimer's disease (AD) , Parkinson's disease (PD) and multiple sclerosis [7, 8]. Understanding the molecular mechanisms of microglia-associated neuroinflammation has thus been central to many neurodegenerative and neuroinflammatory studies.
Microglial response to any pathogenic stimuli including endotoxins like lipopolysaccharide (LPS) is mediated by the activation of several pathways and numerous transcription factors. LPS is a major component of outer membrane of Gram-negative bacteria and it can elicit strong immune responses in the host . LPS binds to toll-like receptor 4 (TLR4) on macrophages  and can activate nuclear factor-kappa B (NF-κB) [11–13] which is an important transcription factor in the regulation of pro-inflammatory enzymes and cytokines. LPS also mediates the production of inducible nitric oxide synthase (iNOS), cyclooxygenase-2 (Cox-2) and several pro- and anti-inflammatory cytokines via phospho NF-κB (pNF-κB) activation [14–16]. Recently, a class of zinc-finger transcription factors, Krüppel-like factors (Klfs) have been reported to play a key role in endothelial and macrophage mediated inflammation [17–19]. Klfs have three carboxyl C2H2 zinc-fingers in their DNA binding domain which has a strong homology with Drosophila melanogaster segmentation protein called Krüppel . These three zinc fingers are usually found at the C-terminus and bind to either a CACCC element or GC-box . The N terminus is involved in protein-protein interaction and gene regulation.
One of the Krüppel like transcription factors, gut Krüppel-like factor (GKLF) or Krüppel like factor-4 (Klf4) which was first identified in the epithelial lining of gut and skin is involved in differentiation and cellular growth [21, 22]. Klf4 is also known to act as a key cell cycle regulator and a necessary mediator of p53 for the G1/S and G2/M cell cycle arrest resulting from DNA damage [23, 24]. Klf4 also inhibits differentiation in murine stem cells , and induces pluripotency in mouse embryonic or adult fibroblasts . In one of the studies, it was shown to transactivate iNOS promoter by potentially interacting with p65 of NF-κB in response to several inflammatory stimuli including LPS, tumor necrosis factor- α (TNF-α) and interferon- γ (IFN-γ) . The expression of Klf4 significantly reduces upon treatment with anti-inflammatory tumor growth factor-β (TGF-β) and upon stimulation with neurotoxic agents [18, 27]. Klf4 also binds to HMGB1 promoter, which is a cytokine mediator of systemic and local inflammations and is involved in facilitating its expression, translocation and release in RAW264.7 macrophages upon LPS stimulation . However, the role of Klf4 in inflammation is ambiguous depending on the type of cell it is expressed in. For example, in endothelial cells, it is known to suppress inflammation  by binding to kallistatin, which in turn inhibits TNF-α mediated NF-κB activation and downregulates macrophage chemoattractant protein-1 (MCP-1) . Lipopolysaccharide-induced endothelial nitric oxide synthase (eNOS), which is known to have anti-inflammatory activity, is significantly decreased upon Klf4 knockdown. In contrast to studies on human macrophages , in mouse monocytic cells, where Klf4 is shown to be involved in inflammatory monocyte differentiation in vivo and in vitro, Klf4 was not found to be involved in iNOS upregulation upon LPS stimulation . All these studies indicate that Klf4 is pleiotropic in nature and its anti-inflammatory or pro-inflammatory functions are cell-type dependent. To date, however, there have been no studies in order to define the possible roles of Klf4 in microglial activation and neuroinflammation. Our studies, therefore, focus on its putative role in endotoxin-mediated microglial activation in brain.
In order to study the role of Klf4 in neuroinflammation, we treated mouse BV-2 cells with LPS to induce acute inflammation. Our data suggests that Klf4 expression increases with increasing dose or time of LPS treatment, and that this is accompanied by increased expression of iNOS, Cox-2 and several pro-inflammatory cytokines. Immunofluorescence and immunoblotting studies revealed that Klf4 translocates to nucleus after LPS treatment in both BV-2 as well as primary microglial cells. As suggested by knockdown studies, Klf4 plays a key role in augmenting the pro-inflammatory effects of LPS and causes microglial activation by upregulating iNOS and other pro-inflammatory cytokines including TNF-α, MCP-1 and IL-6. In addition to its role in mediating iNOS promoter activity, we also show for the first time that Klf4 is an important transcription factor required for Cox-2 promoter activity in response to LPS stimulation, thereby upregulating Cox-2 expression.
Cells and culture conditions
Mouse microglial cell line BV-2 was a kind gift from Dr. Steve Levison, University of Medicine and Dentistry, New Jersey, USA. The cell lines were grown at 37°C in Dulbecco's Modified Eagle's Medium (DMEM) supplemented with 5% sodium bi-carbonate (NaHCO3), 10% fetal bovine serum, penicillin at 100 units/ml and streptomycin at 100 μg/ml. All the reagents related to cell culture were obtained from Sigma Aldrich, St. Louis, USA, unless otherwise stated. Primary mixed glial cultures were prepared from P0-P2 mouse brains as described elsewhere [31, 32]. Briefly, P0-P2 BALB/c mouse pups were sacrificed by decapitation and whole cortex was isolated. The meninges were removed and the tissues were enzymatically digested using trypsin-DNAse. After a brief mechanical dissociation, the cell suspension was passed through 100 mm cell strainers and then centrifuged at 400 g for 7.5 min. The cells were counted using hemocytometer and were plated into 75 cm2 tissue culture flasks at a density of 2 × 105 viable cells/cm2 in minimum essential medium (MEM) supplemented with 10% fetal bovine serum, penicillin at 100 units/ml, and streptomycin at 100 μg/ml, 0.6% glucose and 2 mM glutamine. Exhausted media was replenished with fresh media every 2-3 days after plating. On day 12, when the mixed glial culture was confluent, the flasks were shaken on an Excella E25 (New Brunswick Scientific, NJ, USA) orbital shaker at 250 rpm for 60-75 min to dislodge microglial cells. The non-adherent cells obtained after shaking were plated in bacteriological petridishes for 60-90 min to allow microglial cells to adhere. The adherent cells were scraped, centrifuged and plated in chamber slides at 8 × 104 viable cells/cm2, and incubated at 37°C for 30 min to allow microglial cells to adhere.
LPS administration to animals
Three groups of 6-8 weeks old BALB/c mice were injected intraperitoneally with 5 mg/kg body weight of Salmonella enterica LPS dissolved in 1X PBS. Control animals received only 1X PBS. All the animals of each group were sacrificed at different time point of 3 h, 6 h, 12 h, 24 h and 48 h either for tissue or protein. All experiments were performed according to the protocol approved by the Institutional Animal Ethics Committee.
Short interfering RNA (SiRNA) against mouse Klf4 (sense: 5'- UCC AAA GAA GAA GGA UCU CUU- 3') and scrambled SiRNA (ScRNA) (sense: 5'- GUG CAC AUG AGU GAG AU UU- 3') were designed using an online SiRNA design software (Ambion, Applied biosystems, Austin, USA) and were synthesized by Dharmacon RNAi technologies (Thermo fisher Scientific, USA). 100 nM of Klf4 SiRNA was used for transfection using Lipofectamine RNAi max (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's protocol. Briefly, BV-2 cells were seeded and maintained in sets of three at 37°C and 5% CO2 and when the cells were 70% to 80% confluent, they were transfected in Opti-MEM (Invitrogen) for 6 hours after which fresh 5% DMEM was added to the cells for 30 hours. The specificity of the antisense oligo was validated by using 100 nM of ScRNA and the control group (C) was treated with lipofectamine alone. The cells were then treated with 500 ng/ml of LPS for either 3 h for the analysis of changes in Klf4 mRNA levels by q(RT)-PCR or for 12 hours to analyse any changes in protein in order to perform immunoblotting and cytokine bead arrays (CBA).
For luciferase assays, luciferase reporter gene constructs pGL2-iNOS (kindly provided by Dr. Mark A. Feinberg and Dr. Mukesh K. Jain, Harvard Medical School, Boston, MA, USA. The construct was originally made by Dr. Mark A. Perella, Harvard Medical School, Boston, MA, USA) [18, 33] and pCOX301 (a kind gift from Dr. Manikuntala Kundu, Bose Institute, Kolkata, India)  were used that contained the 1,516 bp region from mouse iNOS 5'flanking region (-1485 bp to +31 bp region inserted in HindIII at 3'and KpnI at 5' sites which removes SV40 promoter upstream to luciferase gene from the construct) and Cox-2 promoter region (-891 bp to +9 bp region also inserted using HindIII at 3'and KpnI at 5' end) cloned upstream of luciferase reporter gene in pGL2-promoter and pGL2-basic vector respectively (Promega, Madison, WI, USA). After 24 hours of SiRNA and ScRNA transfection, 1 μg of these plasmids were used for transfection using 5 μl of lipofectamine 2000 (Invitrogen) in Opti-MEM for 6 hours. The cells were then maintained for additional 12 hours in 5% DMEM before the cells were treated with 500 ng/ml of LPS.
The luciferase assay was carried out using luciferase assay kit (Promega) according to manufacturer's protocol. Briefly, the cells were washed with 1X PBS and lysed in reporter lysis buffer provided by the kit and centrifuged at 12,000 g for 5 minutes at 4°C and supernatant was collected. 100 μl of luciferase assay reagent was dispensed into three sets of luminometer tubes and 20 μl of the collected supernatant was added to each tube and the reading was taken using Sirius single tube luminometer (Berthold detection systems GmBH, Germany). The luciferase units were measured as Relative Luciferase Units (RLU) and these values were normalized to the amount of protein present in the sample.
Nitrite generation by BV-2 cells was used as an indicator of NO release and measured by the Griess reaction as described elsewhere . Briefly, the media from treated cells was centrifuged at 2,000 rpm for 5 min at 4°C to remove cellular debris. 50 μl of this media was incubated for 15 min at room temperature in dark with 50 μl of Griess reagent (sulfanilamide and N-1-napthylethylenediamine dihydrochloride) (Sigma Aldrich) under acidic (phosphoric acid) conditions in order to measure the nitrite content. The readings were taken spectrometrically at 540 nm using microplate spectrophotometer (Biorad, Australia) and the concentration was calculated from a sodium nitrite standard reference curve.
For in vivo studies, the whole brain tissues (except olfactory lobes and hind brain) from three different animals after 3 h, 6 h, 12 h, 24 h and 48 h post LPS administration and untreated controls were dissected and placed in 1.5 ml microfuge tubes with 700 μl of freshly prepared 1X PBS containing 20 μl of protease inhibitor (Sigma Aldrich). Samples were homogenized and centrifuged at 8,000 g for 20 min. Supernatants were collected and protein concentrations were determined using a bicinchoninic assay (BCA) method.
For in vitro studies, control and treated BV-2 cells were harvested using ice-cold 1X PBS. In order to isolate total cellular extracts, the cells were lysed in buffer containing 1% Triton-X-100, 10 mM Tris-HCl (pH 8.0), 150 mM NaCl, 0.5% Nonidet P (NP-40), 1 mM EDTA, 0.2% EGTA, 0.2% sodium orthovanadate and protease inhibitor cocktail (Sigma Aldrich). For nuclear extracts, BV-2 cells were collected with 1X PBS and harvested by spinning at 2000 rpm for 5 min. The cells were resuspended in 400 μl of cold buffer A (10 mM HEPES pH 7.9, 10 mM KCl, 0.1 mM EDTA, 0.1 mM EGTA, 1 mM DTT and 0.5 mM PMSF) and then kept on ice for 15 min. 15 μl of nonionic surfactant, IGEPAL CA 630 (Sigma Aldrich) was then added and vortexed vigorously. The cells were then pelleted for 1 min at 10,000 g and the recovered pellet was resuspended in 50 μl of ice cold buffer B (20 mM HEPES pH 7.9, 400 mM KCl and 1 mM EDTA) and subjected to gentle shaking for 15 min at 4°C. The suspended cells in Buffer B were again pelleted at 4°C and the supernatant having the nuclear protein was collected and estimated by bicinchoninic assay (BCA) method.
30 μg of each protein sample was electrophoresed on a 7.5%-10% sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) and transferred onto a nitrocellulose membrane. The membrane was then blocked in 5% skimmed milk in 1X PBS-Tween-20 (1X PBST) for 4 h at room temperature with gentle agitation. After blocking, the blots were incubated with rabbit anti-Klf4 (Chemicon International, CA, USA) at a dilution of 1:500 in 1% BSA in 1X PBST overnight at 4°C with gentle agitation. After five washes of five minutes each in 1X PBST, blots were then incubated with goat anti-rabbit horseradish peroxidase (Vector Laboratories, CA, USA) at a dilution of 1:5,000 in 1X PBST for 1.5 h, with agitation. The blots were rinsed again in 1X PBST. The blots were developed by using chemiluminescence reagent (Millipore, MA, USA) and exposing them to Chemigenius, Bioimaging System (Syngene, Cambridge, UK). The images were captured and analysed using the Genesnap and Genetools software respectively from Syngene. The blots were stripped for 30 min at 50°C in stripping buffer which contained 62.5 mmol/L Tris-HCl, pH 6.8, 2% SDS, 100 mmol/L 2-mercaptoethanol. The stripped blots were probed with anti-β-tubulin (1:1,000; Santa Cruz Biotechnology, CA, USA) or anti-β-actin (1:10,000; Sigma Aldrich) to determine equivalent loading of total cell extracts and nuclear extracts respectively. Similarly, blots were developed for rabbit anti-iNOS (1:1000, Millipore), Cox-2 (1:1000, Millipore) and pNF-κB (1: 1,000; Ser-536; Cell Signaling technology, MA, USA) using the secondary goat anti-rabbit HP (1:5,000, Vector Laboratories). The protein levels were normalized with either β-tubulin or β-actin levels.
BV-2 cells and mouse primary microglial cells were plated on chamber slides in sets of three and allowed to adhere for 12 h. The cells were fixed in 4% PFA for 20 min at 25°C, following which they were incubated in blocking solution for 1 h at 25°C. They were then stained with rabbit anti-Klf4 (1:250, Millipore) overnight at 4°C. After PBS washes, the anti-rabbit FITC conjugated secondary antibody (1: 250, Vector Laboratories) were added for 1.5 h and then mounted with 4, 6-diamidino-2-phenylindole (DAPI). Images were obtained using Zeiss Apotome microscope (40X magnification; Zeiss, Germany).
12 h and 48 h LPS treated and age matched control BALB/c mice in sets of three were perfused transcardially with 1X PBS and whole brains isolated were fixed with 4% paraformaldehyde (PFA) in 1X PBS for 24 h at 4°C and subsequently kept in 30% sucrose for additional 24-48 h at 4°C or until the tissue is immersed at the bottom of the tube. The brains were then processed for cryostat sectioning and the sections were stained for Klf4 and Iba1, a marker of activated microglia. Briefly, the cryostat sections were washed with 1X PBS and processed for antigen retrieval by incubating at 70°C for 1 h in antigen unmasking solution (Vector laboratories). The sections were then washed with 1X PBS and blocked for 1.5 h with 5% BSA in 1X PBS. Microglia were labeled with rabbit anti-Iba1 antibody (1:250; Wako, Japan), along with mouse anti-Klf4 (1:100, Santa Cruz biotechnology) by incubating the sections overnight at 4°C. After five washes with 1X PBS, the sections were incubated with goat anti-rabbit Alexa Fluor 594 (1:1000; Molecular Probes, Oregon, USA) for Iba1 and horse anti-mouse Fluorescein Isothiocyanate (FITC, 1:250; Vector Laboratories) for Klf4 for 1.5 h. The slides were then mounted with mounting medium containing DAPI (Vector laboratories). The stained slides were observed under the Zeiss Axioplan 2 Fluorescence microscope (20X magnification; Zeiss, Germany). Higher magnification images were captured with Zeiss LSM 510 confocal microscope (40X magnification; Zeiss, Germany).
In order to study the interaction between pNF-κB and Klf4, co-immunoprecipitation was carried out using 100 μg of nuclear extract which was incubated with 1 μg of pNF-κB antibody (Cell signaling technologies) and 1 μg of rabbit IgG (Vector laboratories) in IP buffer containing 50 mM Tris-Cl pH 8.0, 150 mM NaCl, 10% glycerol, 1 mM Phenyl methyl sulfonyl fluoride (PMSF) and 0.5% Triton X-100 at 4°C overnight with gentle shaking. The Sepharose G beads (GE healthcare biosciences AB, Uppsala, Sweden) were calibrated with IP buffer and 30 μl of the slurry was then added to the protein-antibody mixtures for 4 h at room temperature with gentle rocking. The beads were then pelleted at 12,000 g for 2 min and washed four times with 600 μl of ice cold IP buffer after discarding the supernatant. The sample buffer was then added to each sample bead and loaded onto gel for immunoblotting.
Reverse transcriptase PCR (RT-PCR) and quantitative real-time (qRT)-PCR
BV-2 cells, following treatment were washed twice with 1X PBS and lysed in Trizol reagent (Sigma Aldrich) as per the manufacturer's protocol. The RNA was isolated by phenol-chloroform method and it was quantified using spectrophotometer (GE healthcare biosciences AB, Uppsala, Sweden). RT-PCR was performed using the onestep RT-PCR kit (Qiagen Biosciences; Hamburg, Germany) following the manufacturer's protocol on Genius Techne thermal cycler as described earlier . Briefly, 500 ng of the total RNA was used as template in 25 μl PCR reactions, containing 5X PCR buffer (5 μl), dNTPs (1 μl), enzyme mix (1 μl) and specific forward and reverse primers (0.5 μM) and RNase free water. Oligonucleotide primer specific for mouse iNOS (forward: 5'-CCC CCG AAG TTT CTG GCA GCA GC-3', reverse: 5'-GGC TGT CAG AGC CTC GTG GCT TTG G -3', annealing temperature: 62°C, 35 cycles, amplicon size: 468 bp), Cox-2 (forward: 5'-AAG GCC TCC ATT GAC CAG -3', reverse: 5'- TCT TAC AGC TCA GTT GAA CGC -3', annealing temperature: 56°C , 35 cycles, amplicon size: 512 bp) and cyclophilin mRNAs (forward: 5'-CCA TCG TGT CAT CAA GGA CTT CAT -3', reverse: 5'-TTG CCA TCC AGC CAG GAG GTC T -3', annealing temperature: 58°C , 35 cycles, amplicon size: 192 bp) were procured from Microsynth (Balgach, Switzerland). PCR products were separated on 1.5% - 2% agarose gel, stained with ethidium bromide, and photographed using GeneSnap software provided with Chemigenius Bioimaging System, Syngene. Photographs were analyzed by GeneTools software provided with same Bioimaging System. The mRNA levels were normalized to cyclophilin.
For performing q(RT)-PCR for Klf4 mRNA, Klf4 primers (forward: 5'-TGC CAG ACC AGA TGC AGT CAC- 3', reverse: 5'-GTA GTG CCT GGT CAG TTC ATC- 3', annealing temperature: 60°C, 35 cycles, amplicon size: 286 bp) were procured from Sigma. SYBR Green Supermix (Bio-Rad, Hercules, CA) was used and 500 ng of cDNA was used as a template on ABI Prism 7700 sequence detection system (Applied Biosystems, Foster City, CA). The conditions used for real time PCR have been described earlier  and were as follows: 95°C for 3 min (1 cycle), 94°C for 20 s, 60°C for 30 s, and 72°C for 40 s (40 cycles). The dissociation curves were generated to check for the specificity of primer annealing to the template. The real time PCR results were normalized to 18S rRNA internal control and quantified using comparative Ct method (2-[∆][∆]Ct)  and analyzed using the iCycler Thermal Cycler Software (Applied Biosystems).
Cytokine bead array (CBA)
A CBA mouse inflammation kit (BD Biosciences, NJ, USA) was used to quantitatively measure cytokine levels in the control and LPS treated BV-2 cells. Using 50 μl of mouse inflammation standard and sample dilutions, the assay was performed according to the manufacturer's instructions and analyzed on the FACS Calibur (Becton Dickinson). This method quantifies soluble particles, in this case cytokines using a fluorescence based detection mechanism. The beads, coated with IL-6, TNF-α and MCP-1 react with test lysates and standards, to which fluorescence dyes are then added. Analysis was performed using CBA software that allows the calculation of cytokine concentrations in unknown lysates [35, 38].
Electrophoretic mobility shift assay (EMSA)
EMSA was performed as described elsewhere  using LightShift Chemiluminescent EMSA Kit (Pierce Biotechnology, Thermo Fisher Scientific Inc., Rockford, USA). Briefly, 100 femtomoles of biotin labeled and 100-molar excess of unlabelled Oligonucleotide (Cold probe) corresponding to iNOS-binding sequence (5- CTG CCT AGG GGC CAC TG -3) were used (Sigma Proligo, Singapore). Nuclear extract (5 μg) isolated from LPS-treated BV-2 cells was pre- incubated with anti-Klf4 Gel shift transcruze antibody (1 μg; Santa Cruz Biotechnology) for 1 h at 4°C. Biotin-labeled probes were added for additional 30 min at room temperature. After electrophoresis on 6% polyacrylamide gel, the samples on gel were transferred onto a presoaked positively charged nylon membrane (Roche diagnostics, GmBH, Germany). The ultra violet cross linking was carried out using UV cross linker (UVC 500, Hoefer scientific, USA). The blots were then incubated in blocking buffer for 15 min followed by incubation with streptavidin-horseradish peroxidase (1:300; HRP) conjugate solution for additional 15 minutes with gentle shaking. After washing with wash buffer supplied by the manufacturer, the membrane was then incubated in substrate equilibration buffer for five min followed by addition of Enhanced Chemiluminiscent reagent (ECL) supplied by the manufacturer. The blot was developed by exposing it to Chemigenius, Bioimaging System (Syngene).
All the experiments were performed in sets of three unless otherwise mentioned and the data generated were analyzed statistically by paired two-tailed Student's t-test. A statistical p-value of 0.01 and 0.05 were considered significant.
Dose and time dependent increase in Klf4 levels in BV-2 cells in total cell extract
LPS treatment increases the expression of inflammatory mediators, iNOS, Cox-2 and pro-inflammatory cytokines in BV-2 mouse microglial cells
In order to confirm the onset of inflammation in BV-2, we next investigated the expression levels of pro-inflammatory effector enzymes, iNOS and Cox-2 in a dose and time-dependent manner upon LPS treatment. This study was carried out using the same doses and four different time points except for 1 h time point where we did not notice any considerable change in Klf4 expression. We observed a gradual increase in the levels of both iNOS and Cox-2 with increasing dose and time of LPS treatment. Significant 4-fold increase in iNOS expression with 500 ng/ml LPS dose after 12 hours of stimulation was observed which was found significant with respect to control (p < 0.01) (Fig 1C). The expression of iNOS increased at earlier time points of 3 and 6 hours of LPS treatment and this increase was also found to be significant with respect to control (p < 0.01) (Fig 1C). Similarly, Cox-2 expression also increased by more than 5-fold with respect to control after 12 hours of LPS treatment (p < 0.01) (Fig 1D). This increase in iNOS and Cox-2 levels were found to be significant even after 24 hours of LPS stimulation (p < 0.01). Microglial activation and neuroinflammation is also associated with the release of several pro-inflammatory cytokines and chemokines. CBA using BV-2 cell lysates was performed to test any changes in the levels of key pro-inflammatory cytokines and chemokines, TNF-α, MCP-1 and IL-6 upon LPS stimulation. We observed a significant increase the levels of these mediators with increasing time point. The levels of TNF-α, an acute phase protein that is secreted by macrophages and microglia in response to pathogenic stimuli, increased by more than 10-folds and reached up to 5,000 pg/ml (p < 0.01) at 3 h which was significant with respect to control and by 12 h, the levels were maintained at 4,000 pg/ml (p < 0.01) (Fig 1E). MCP-1, a chemokine which is known to recruit inflammatory cells into CNS parenchyma , was recorded to be around 3,000 pg/ml at 12 h of LPS stimulation which was 3 times more than control levels (p < 0.01) (Fig 1F). Another pro-inflammatory cytokine, IL-6 which is pleotropic in nature [41, 42] is known to increase dramatically in response to inflammation and CNS injury. The levels of IL-6 also increased to 4,000 pg/ml in response to LPS stimulation which is an increase of about 4-fold with respect to control at all the time points (p < 0.01) (Fig 1G). We observed that the increase in expression levels of Cox-2, iNOS and other pro-inflammatory cytokines were corresponding to the levels of Klf4 which indicates that this transcription factor might have a role in mediating inflammatory response in BV-2 following LPS stimulation.
Increase in nuclear Klf4 upon LPS stimulation in vitro
In order to study the nuclear translocation of Klf4, we carried out immunostaining in LPS treated BV-2 microglial cell line and mouse primary microglia for different time durations. We found that in BV-2 cells Klf4 translocates to nucleus as early as 3 h which can be seen till 12 h (Fig 2B). It is seen localized to specialized regions in the nucleus which probably are transcriptionally active regions or nucleoli. Similarly, in primary microglia, after 3 h and 6 h of LPS treatment, the expression of Klf4 increases and is perinuclear in location which at 12 h time point translocates to nucleus (Fig 2C). This study reveals that Klf4 migrates to nucleus at earlier time points and as a transcription factor probably has a role in onset of inflammation.
LPS induces Klf4 expression in vivo
Knockdown of Klf4 and subsequent decrease in production of pro-inflammatory cytokines
Considering the potential role of Klf4 in inflammation, we hypothesized that Klf4 may play a role in the upregulation of cytokines such as TNF-α, MCP-1 and IL-6. Since there was no significant change in Klf4 levels in either Si-alone or Sc-alone conditions with respect to untreated controls, rest of the experiments did not include these conditions and only untreated cells served as control. CBA analysis was carried out to evaluate the levels of these cytokines after 12 hours of LPS treatment in BV-2 cells. As we have noticed earlier, the levels of all the cytokines in LPS treated cells were significantly elevated with respect to that of control. However, in Si+LPS cells, a significant reduction in their levels with respect to LPS and Sc+LPS cells was found. TNF-α levels were significantly reduced by about 2-fold in Si+LPS cells (p < 0.01) (Fig 4C). A similar 2-fold reduction was also observed in MCP-1 levels in Si+LPS cells transfected samples when compared to LPS alone treated cells (p < 0.01) (Fig 4D). The CBA also revealed a significant reduction by more than 2-fold in IL-6 levels when compared to Sc+LPS and LPS alone treated samples (p < 0.01) (Fig 4E). We can therefore conclude from these observations that Klf4 plays an important role in mediating inflammation as knocking it down significantly reduces the production of pro-inflammatory cytokines in BV-2 microglial cells.
Klf4 knockdown results in decreased iNOS expression and NO production
Klf4 regulates iNOS promoter activity in BV-2 microglial cells
Klf4 has been shown to bind to the iNOS promoter in human macrophages upon LPS and IFN-γ treatment . Since we saw a decrease in iNOS levels upon Klf4 knockdown in microglial cells and that iNOS is mostly regulated at the transcriptional level , we wanted to know if Klf4 also interacts with iNOS promoters in microglial cells upon endotoxin stimulation. Interaction of Klf4 to iNOS promoters was assessed using iNOS-pGL2 luciferase construct that has firefly luciferase directly driven by iNOS promoter. This assay was carried out for untreated control as well as LPS, Si+LPS and Sc+LPS treated BV-2 cells. We found that in LPS and Sc+LPS treated cells, the promoter activity measured in terms of relative luciferase units increased significantly with respect to control (p < 0.01) but decreased significantly by 5-folds in Si+LPS treated cells (p < 0.01) (Fig 5D). This finding suggests that Klf4 is an important transcription factor required for iNOS promoter activity and considering its role as a transcription factor, it may interact with iNOS promoter in microglial cells upon LPS stimulation.
In order to confirm this, we then carried out electromobility shift assay (EMSA) using the biotinylated iNOS probe for -212 bp position of iNOS promoter (5- CTG CCT AGG GGC CAC TG -3). This sequence was found to be important for Klf4 binding to iNOS promoter and it is close to pNF-kB binding site on this promoter . In this experiment, nuclear extracts were isolated from 12 h LPS treated sample and incubated with the biotinylated iNOS probe along with or without the cold probe. This resulted in a 'shift' (Lane 2) with respect to probe alone (Lane 1). Addition of anti-Klf4 antibody resulted in 'supershift' with respect to the shift observed in protein-DNA complex (Lane 3; Fig 5E). We also carried out EMSA with nuclear extracts from unstimulated control cells and observed a significant decrease in the 'shift' which confirms that the iNOS probe binding increases upon LPS stimulation (Lane 4). In order to confirm the specificity of Klf4 for the probe sequence, we also incubated nuclear extracts in presence of 100-molar excess of cold probe and observed a significant decrease in the intensity of shifted bands (Lane 5) which indicate that this probe is rather specific in nature. We can hereby conclude from these experiments that Klf4 interacts with iNOS promoter upon LPS induction. This is how Klf4 may be directly upregulating iNOS production at the transcriptional level itself thereby influencing the production of NO.
Klf4 also regulates Cox-2 expression in microglia in response to LPS
Klf4 potentially interacts with pNF-kB
Activation of microglia - which is marked by extensive proliferation, chemotaxis, and altered morphology - is the hallmark of neuroinflammation in several neurodegenerative diseases and pathological conditions of CNS. It's activation in response to LPS is well documented [44, 45] and it generates numerous pro- and anti-inflammatory mediators upon activation including IL-1β, TNF-α, MCP-1 [9, 46], IL-6  and IL-10  among other immunomodulators. From various studies on macrophages and microglia it is known that LPS binds to TLR4 receptors and initiates a cascade leading to the phosphorylation of NF-κB which plays a major role in inflammation in these cells [13, 49]. However, inflammation is a complex process and, considering that several pathways are upregulated upon endotoxin stimulation, the role of other transcription factors and co-activators cannot be ruled out in LPS-induced inflammation. In this context, Klf4 has recently been identified as an inflammatory gene upregulated in macrophages during inflammation which has shown to be indispensable for iNOS expression in human macrophages . However, reports on mouse macrophages have suggested that increased Klf4 expression in response to LPS is not associated with iNOS expression . Since these studies were limited to peripheral system, it was important therefore to investigate the role of Klf4 in the activation of microglia to establish its involvement in neuroinflammation. Our studies have demonstrated for the first time in CNS that (i) Klf4 expression increases in microglial cells with time upon LPS stimulation in vitro and in vivo, (ii) Klf4 is involved in upregulation of pro-inflammatory cytokines and key inflammatory mediators including iNOS and Cox-2 and (iii) Klf4 interacts with pNF-κB upon LPS treatment for its pro-inflammatory activity.
At present, there are no known Klf4 knockout models available as Klf4 -/- mice do not survive and die shortly after birth due to defect in epithelial differentiation and barrier formation [21, 22]. Therefore, understanding the mechanism underlying the activation of Klf4 is limited to in vitro work. In tissues isolated from brains, we observed that Klf4 expression increases in response to LPS. Onset of inflammation in mouse brain was confirmed by an increase in pNF-κB and pro-inflammatory cytokines (data not shown) upon LPS treatment. We saw similar results in primary microglia isolated from P0-P2 BALB/c pups where LPS stimulation increased the Klf4 expression at earlier time points. A role for Klf4 in mediating inflammation could not be confirmed by these studies, which were limited to observing the expression of Klf4 in response to the bacterial endotoxin. We used BV-2 microglial cells to perform experiments where a transient knockdown was comparatively feasible to perform without any significant cell death. Our data suggest that expression of Klf4 increases upon LPS stimulation in a time and dose dependent manner in these microglial cells as well. Our observations for nuclear translocation studies suggest that Klf4 migrates to the nucleus upon endotoxin stimulation as early as 1 h after stimulation, and it is maintained at increased levels with respect to unstimulated control cells even at later time points. Keeping in mind the differences in either their cell cycle kinetics or response to inflammatory stimuli, minor discrepancies in the time kinetics of Klf4 nuclear localization between BV-2 cells and primary microglia were anticipated.
It is likely that Klf4 remains stored in the cytoplasm and its expression increases and it translocates to nucleus after LPS stimulation. Immunofluorescence images from BV-2 cells reveal that Klf4 is concentrated within specific regions of the nucleus which may be nucleoli . So far, many Krüppel-type transcription factors have been found to be associated with nucleoli [51, 52]. However, the roles of the nucleolar-targeted Krüppel-type zinc-finger proteins are not well known . Considering the role of Klfs as transcription factors in acetylation reactions, it is also likely that they are localized into specialized regions of active transcription and are involved in differential acetylation of target genes . Our findings indicate a possible role of Klf4 as a transcription factor in response to endotoxin stimulation. Most importantly, the expression of this transcription factor corresponded with that of key inflammatory enzymes, iNOS and Cox-2 as well as pro-inflammatory cytokines including TNF-α, MCP-1 and IL-6. Analysis of protein and tissues isolated from LPS treated mice also confirmed an increase in Klf4 with respect to control upon LPS administration.
iNOS is an important mediator of inflammation that catalyzes the production of nitric oxide (NO) which, under physiological conditions, can regulate vasoconstriction. NO also acts as a neurotransmitter in the CNS and has protective functions in anti-inflammatory pathways. However, at high concentrations NO readily reacts with superoxide ion (∙ O2-) to produce peroxynitrite (ONOO-) which causes irreversible damage to lipids and proteins resulting in cell death  and can therefore potentially be neurotoxic . However, the mechanisms of neuronal death are complex and not very well understood . The role of NF-κB in the LPS-mediated upregulation of iNOS is well established [5, 16]. For the first time, we have shown that Klf4 is indispensable for iNOS expression in microglial cells. However, in agreement with studies on iNOS expression by Klf4 in human macrophages, we have shown a novel regulation of iNOS expression and subsequent NO production in microglia upon LPS stimulation. Klf4 knockdown resulted in decreased iNOS mRNA and protein expression within 12 hours of LPS treatment. This decrease in iNOS levels also correlated with a significant decrease in NO production observed in Si+LPS cells. Luciferase assays revealed that Klf4 interacts with iNOS promoter elements and upregulates iNOS expression upon LPS stimulation in microglial cells. Gel shift studies with biotinylated probe showed that Klf4 binds to -212 bp on iNOS promoter site in microglial cells upon LPS treatment. Given these observations, we suggest a possible role for Klf4 in iNOS expression and subsequent NO release in microglia and provide a novel mechanism for their upregulation in the presence of LPS. However, further studies are required in order to understand the detailed mechanism of Klf4 in iNOS-mediated neuronal death.
Cox-2 is another inflammatory enzyme, which catalyzes the rate-limiting step in the inducible production of prostaglandins like PGE2  from arachidonic acid, which is then converted to active prostanoids by synthases . The expression of Cox-2 requires binding of several cis-acting elements to Cox-2 promoters  and NF-κB plays a major role in the upregulation of Cox-2 and subsequent prostanoids generation [59–61]. The relationship between Cox-2 and Krüppel-like factors was not known until recent studies suggested that Cox-2 derived PGE2 may collaborate with Klf4 or Klf5 to regulate the activation of the complement system and exert diverse effects on the intestinal epithelium . Since our findings suggest that Klf4 binds closer to the pNF-κB site on the iNOS promoter, and given that Cox-2 also has pNF-κB binding sequences on its promoter, we then studied the effect of Klf4 knockdown on Cox-2 expression. Interestingly, we saw a significant decrease in Cox-2 mRNA and protein levels within 12 h of LPS stimulation upon Klf4 knockdown. Promoter assays revealed that Klf4 interacts with Cox-2 promoters, which make Klf4 upregulation indispensable for Cox-2 expression in response to LPS stimulation. However, the exact sequences to which Klf4 binds on a Cox-2 promoter are not known. It would be of high interest to define possible binding sites for Klf4 on the Cox-2 promoter. Our finding is important considering the essential role played by Cox-2 in mediating neuroinflammation. However, we are not sure if Klf4 expression also mediates the production of PGE2 via Cox-2 upregulation. Its role in PGE2 production still needs to be determined.
All the existing studies have focused on the putative role of TNF-α, IFN-γ [18, 30] and IL-1β  on the expression of Klf4. Moreover, the upregulation of several of these pro-inflammatory cytokines depends on NF-κB activation [13, 49, 64]. Therefore, in addition to understanding the role of Klf4 in mediating iNOS and COX-2 expression, we also determined its role in regulating the expression of pro-inflammatory cytokines. Our findings suggest that the expression of pro-inflammatory cytokines TNF-α, MCP-1 and IL-6 is also modulated by Klf4 in order to maintain a state of activation in microglial cells. We observed a significant decrease in the levels of these pro-inflammatory cytokines in Si+LPS cells which were significantly higher in LPS treated cells with respect to untreated controls. Further studies may be required in order to understand in detail the mechanism of Klf4-mediated cytokine release. These studies will provide a better understanding of how inflammation can be modulated by Klf4-mediated microglial activation. Overexpression studies using Klf4 constructs can also be carried out to further evaluate the extent of involvement of Klf4 in mediating inflammation.
Our findings prompt us to believe that Klf4 is a pleiotropic transcription factor which plays a key role in the establishment of neuroinflammation. The mechanisms of pro-inflammatory cytokine regulation by Klf4 are not clearly understood. Since pNF-κB is involved in the expression of these cytokines , it is likely that Klf4 acts as a binding partner to pNF-κB in co-operatively upregulating pro-inflammatory cytokines. Our co-immunoprecipitation studies confirm that Klf4 interacts with pNF-κB, and this result is in agreement with previously reported studies . It is therefore possible that most of the pro-inflammatory activities that involve pNF-κB may have Klf4 as a potential binding partner and Klf4 activation might employ a similar pathway to that of pNF-κB. Given that Klf4 plays an important role in cell differentiation and proliferation, involvement of multiple pathways in Klf4 expression cannot be ruled out. Further studies, including overexpression of Klf4, will therefore be required for a full understanding of this transcription factor, which promises to be a potent target for therapeutic agents aiming to alleviate inflammation in brain.
This work was supported by the core grant from the Department of Biotechnology, to the National Brain Research Centre and Life Science Research Board, Defence Research & Developmental Organization (DLS/81/48222/LSRB-213/EPB2010), Government of India. DKK and SD are recipient of Senior Research Fellowships from Indian Council of Medical Research and University Grants Commission, Government of India, respectively. The authors thank Mr. Kanhaiya Lal Kumawat and Mr. Manish Dogra for excellent technical assistance.
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